SLC9A1

General Information

Gene Name       : SLC9A1
Gene ID             : ENSG00000090020.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLC9A1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC9A1ENSG00000090020.109.409.799.59ENCSR000AEF
HepG2SLC9A1ENSG00000090020.107.934.806.37ENCSR985KAT
K562SLC9A1ENSG00000090020.1011.989.6710.82ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC9A1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLC9A1 RNA is bound by 14 proteins.  







eCLIP assay for SLC9A1 is not avaliable on ENCORE database.





14 proteins are bound to SLC9A1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12742586127425976-3'-UTR,intron-Distal3.250874.42441HepG2PCBP2
chr12748107327481168-5'-UTR,intron-Distal,intron-Proximal3.7279310.11557HepG2DDX59
chr12748108227481135-5'-UTR,intron-Distal,intron-Proximal3.519035.44241K562DROSHA
chr12748110227481190-5'-UTR,intron-Distal,intron-Proximal6.0557510.48254K562PCBP1
chr12748106327481188-5'-UTR,intron-Distal,intron-Proximal5.1776826.91066HepG2PCBP2
chr12748118827481316-5'-UTR,intron-Distal,intron-Proximal5.5851416.92837HepG2PCBP2
chr12748106127481174-5'-UTR,intron-Distal,intron-Proximal3.966617.07387HepG2HNRNPK
chr12748107827481166-5'-UTR,intron-Distal,intron-Proximal3.209223.66317K562PTBP1
chr12748073727480804-5'-UTR,CDS,intron-Distal4.169403.81597K562RBM15
chr12748105927481166-5'-UTR,intron-Distal,intron-Proximal3.7757510.35784K562HNRNPK
chr12748118627481283-5'-UTR,intron-Distal,intron-Proximal3.424528.97686K562HNRNPK
chr12748118627481306-5'-UTR,intron-Distal,intron-Proximal3.201378.93976HepG2DDX59
chr12748120227481257-5'-UTR,intron-Distal4.390553.94601K562PCBP1
chr12748097027481055-5'-UTR,intron-Distal,intron-Proximal4.964758.25079K562HNRNPK
chr12748117427481328-5'-UTR,intron-Distal,intron-Proximal4.421459.43946HepG2HNRNPK
chr12748128327481368-5'-UTR,intron-Distal3.679114.10487K562HNRNPK
chr12744029327440349-CDS,intron-Distal,intron-Proximal4.212114.22893K562RBM15
chr12748151327481618-intron-Distal3.529864.11395HepG2NCBP2
chr12748145827481503-intron-Distal,intron-Proximal3.955493.32488HepG2DDX3X
chr12743352727433623-intron-Distal4.324244.70436K562EWSR1
chr12743351427433598-intron-Distal3.969093.43867K562CSTF2T
chr12748150327481577-intron-Distal4.6752310.30616HepG2DDX3X
chr12746656927466663-intron-Distal4.310133.48173K562GTF2F1
chr12748153627481614-intron-Distal3.792744.31803K562NCBP2
chr12743345527433605-intron-Distal4.478296.86851K562FAM120A
chr12748042027480464-intron-Distal,intron-Proximal3.901373.28989K562RBM15
chr12748145327481499-intron-Distal,intron-Proximal4.204863.48187K562RBM15
chr12743352427433656-intron-Distal5.461475.62492K562EIF4G2
chr12743402127434073-intron-Distal,intron-Proximal4.513834.64560K562FAM120A
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC9A1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC9A1 is not available on ENCORE database.

  • 100 RBPs can affect the levels of SLC9A1.  








The Knockdown/knockout RNA-Seq assay for SLC9A1 is not available on ENCORE database.





100 RBPs can affect the gene expression of SLC9A1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC9A1ENSG00000090020.6508.55620298.307100.769509.401508.41710HepG2ACO1
SLC9A1ENSG00000090020.6771.82200262.012801.5585016.5967015.40600HepG2AKAP1
SLC9A1ENSG00000090020.6450.09620299.710100.586604.999303.99450HepG2AKAP8L
SLC9A1ENSG00000090020.6355.13670216.802100.711904.306503.33560HepG2ASCC1
SLC9A1ENSG00000090020.6295.88470406.58790-0.458503.250502.51570HepG2AUH
SLC9A1ENSG00000090020.6818.95730446.392200.8754010.738809.66080HepG2BOP1
SLC9A1ENSG00000090020.6305.26670205.974100.567502.759601.98820HepG2CIRBP
SLC9A1ENSG00000090020.6384.12440298.244100.365002.312001.69530HepG2CKAP4
SLC9A1ENSG00000090020.6398.09650291.417200.449903.096002.42370HepG2CELF1
SLC9A1ENSG00000090020.6313.37330201.115300.639803.672502.89980HepG2DDX21
SLC9A1ENSG00000090020.6522.28370251.006601.057009.838708.72230HepG2DDX3X
SLC9A1ENSG00000090020.6736.66010465.379600.662502.545801.60930HepG2DDX59
SLC9A1ENSG00000090020.6516.03480215.577001.2592012.1974011.00870HepG2DDX6
SLC9A1ENSG00000090020.6342.38540249.958100.453803.189202.49750HepG2DNAJC2
SLC9A1ENSG00000090020.6295.33080207.282000.510602.227901.68990HepG2EIF2S1
SLC9A1ENSG00000090020.6346.99350228.126500.605003.066602.11930HepG2EIF3D
SLC9A1ENSG00000090020.6342.07070229.091500.578302.960702.29870HepG2EIF4A3
SLC9A1ENSG00000090020.6603.82460223.013501.4369013.8753012.40110HepG2EIF4B
SLC9A1ENSG00000090020.6633.90630466.836600.441303.549702.88210HepG2ETF1
SLC9A1ENSG00000090020.6508.45650291.500900.802507.784606.38920HepG2EWSR1
SLC9A1ENSG00000090020.6817.44050487.580100.745405.914304.83040HepG2FIP1L1
SLC9A1ENSG00000090020.6432.37230254.461200.764704.508303.10490HepG2FUS
SLC9A1ENSG00000090020.6479.14650231.081501.052009.577608.36010HepG2FXR1
SLC9A1ENSG00000090020.6393.77430214.394700.877006.368405.38090HepG2G3BP1
SLC9A1ENSG00000090020.6312.77300203.113900.622703.294202.30600HepG2GEMIN5
SLC9A1ENSG00000090020.6703.16950464.590700.597803.416902.71160HepG2GPKOW
SLC9A1ENSG00000090020.6404.59130284.799000.506404.057102.88820HepG2HDGF
SLC9A1ENSG00000090020.6358.75390254.565400.494902.465401.85310HepG2HNRNPA1
SLC9A1ENSG00000090020.6387.27400283.168600.451602.283701.64840HepG2HNRNPC
SLC9A1ENSG00000090020.6357.08370281.295600.344101.991301.46710HepG2HNRNPU
SLC9A1ENSG00000090020.6549.45800217.939201.3340015.5852014.13780HepG2IGF2BP2
SLC9A1ENSG00000090020.6367.66060287.332200.355602.118701.46750HepG2ILF2
SLC9A1ENSG00000090020.6934.95460505.142500.888108.136306.70360HepG2LARP4
SLC9A1ENSG00000090020.6331.93900231.161900.521902.467801.84800HepG2MAGOH
SLC9A1ENSG00000090020.6617.07490232.465801.4083012.0400010.78790HepG2MATR3
SLC9A1ENSG00000090020.6563.86710394.549400.515003.588002.66830HepG2MSI2
SLC9A1ENSG00000090020.6476.66420237.949901.002208.420407.34480HepG2NCBP2
SLC9A1ENSG00000090020.6409.91230238.313200.782403.815402.75970HepG2PABPC1
SLC9A1ENSG00000090020.6351.50420211.947700.729704.467403.56290HepG2PABPC4
SLC9A1ENSG00000090020.6369.50750230.568900.680305.071704.37750HepG2PTBP1
SLC9A1ENSG00000090020.6434.26910296.586400.550003.759703.07690HepG2PUF60
SLC9A1ENSG00000090020.6447.90810314.847800.508404.777604.04230HepG2PUM1
SLC9A1ENSG00000090020.61061.37940314.612701.7542047.6776045.20520HepG2PUM2
SLC9A1ENSG00000090020.6458.35510303.845400.593005.596204.77580HepG2PUS1
SLC9A1ENSG00000090020.6661.77140390.185000.762107.578006.81910HepG2RBM22
SLC9A1ENSG00000090020.6338.10200137.432801.298603.953101.97870HepG2RBM39
SLC9A1ENSG00000090020.6450.71630256.608300.812607.607506.78970HepG2NELFE
SLC9A1ENSG00000090020.6315.96130238.982500.402701.976801.44340HepG2RECQL
SLC9A1ENSG00000090020.6504.02970221.988901.1829014.0513012.80500HepG2RPS19
SLC9A1ENSG00000090020.6330.11600151.253601.125903.085101.63500HepG2SF1
SLC9A1ENSG00000090020.6880.07060502.906600.807206.305105.26310HepG2SF3A3
SLC9A1ENSG00000090020.6393.72930240.067700.713705.798804.99620HepG2SF3B4
SLC9A1ENSG00000090020.6397.45920292.112800.444203.179902.49770HepG2SMN1
SLC9A1ENSG00000090020.6321.19200135.177901.248504.065202.40290HepG2SNRNP200
SLC9A1ENSG00000090020.6898.52120488.302000.879702.032101.36700HepG2SNRNP70
SLC9A1ENSG00000090020.6884.54990440.692501.0051013.5644012.67840HepG2SRFBP1
SLC9A1ENSG00000090020.6153.07840250.86420-0.712603.389501.59310HepG2SRP68
SLC9A1ENSG00000090020.6443.41680250.572300.823307.946807.24200HepG2SRSF1
SLC9A1ENSG00000090020.6669.51840292.845801.1929022.8071021.25130HepG2SRSF5
SLC9A1ENSG00000090020.6286.88270203.848400.492902.816702.26130HepG2SRSF9
SLC9A1ENSG00000090020.6280.51360382.61310-0.447803.034002.50200HepG2SSB
SLC9A1ENSG00000090020.6651.14610333.037900.9672016.4391015.12730HepG2SUCLG1
SLC9A1ENSG00000090020.6639.71810262.202601.2867012.7267011.45310HepG2SUPV3L1
SLC9A1ENSG00000090020.6306.82070225.206300.446002.303801.78410HepG2TAF15
SLC9A1ENSG00000090020.6379.20240273.287300.472402.954502.44050HepG2TIAL1
SLC9A1ENSG00000090020.6385.10490275.777500.481603.540502.92010HepG2TRIM56
SLC9A1ENSG00000090020.6445.36220289.765800.620004.663803.49640HepG2TUFM
SLC9A1ENSG00000090020.6913.03540417.055401.1303015.0605013.54680HepG2U2AF1
SLC9A1ENSG00000090020.6845.15660157.240802.4261010.562808.53480HepG2U2AF2
SLC9A1ENSG00000090020.6483.52640306.721400.656603.941802.93350HepG2UBE2L3
SLC9A1ENSG00000090020.6613.99030430.596100.511805.207704.42920HepG2UTP3
SLC9A1ENSG00000090020.6434.79380255.601800.766304.587203.23900HepG2XRCC6
SLC9A1ENSG00000090020.6909.53070490.515700.8907020.1576019.01550HepG2ZNF622
SLC9A1ENSG00000090020.6395.18880596.48980-0.594005.942505.16040K562AGGF1
SLC9A1ENSG00000090020.6406.06590620.67240-0.612105.156504.25230K562AKAP8L
SLC9A1ENSG00000090020.61512.30990411.020501.8794022.9996021.49050K562AQR
SLC9A1ENSG00000090020.6494.46220651.23060-0.397303.193102.20730K562ATP5C1
SLC9A1ENSG00000090020.6533.52110416.662500.356602.041401.35950K562CPSF6
SLC9A1ENSG00000090020.6743.73410564.291700.398203.311502.60880K562DDX47
SLC9A1ENSG00000090020.6473.77560261.618100.856606.724105.25240K562EFTUD2
SLC9A1ENSG00000090020.6530.39140279.993900.921604.865903.44710K562EIF3D
SLC9A1ENSG00000090020.6515.79840221.248901.221004.691903.62420K562EIF4A3
SLC9A1ENSG00000090020.6742.31070423.979400.807906.064304.78660K562FMR1
SLC9A1ENSG00000090020.6470.64720230.090001.0323010.321509.23780K562FXR1
SLC9A1ENSG00000090020.642.02020105.29260-1.325204.802103.81160K562G3BP2
SLC9A1ENSG00000090020.6638.83930397.795700.683306.249305.05870K562GPKOW
SLC9A1ENSG00000090020.6759.63930316.161701.2646020.0036018.47890K562HNRNPC
SLC9A1ENSG00000090020.6486.68640658.69650-0.436602.185501.46260K562KIF1C
SLC9A1ENSG00000090020.6557.77440388.299100.522403.739202.71100K562METAP2
SLC9A1ENSG00000090020.6344.69370220.926600.641604.310002.76060K562NCBP2
SLC9A1ENSG00000090020.6766.20000416.900200.877903.674302.23050K562PABPC1
SLC9A1ENSG00000090020.6353.49870175.100701.013406.579705.05210K562PCBP2
SLC9A1ENSG00000090020.6977.51820546.621000.838508.900307.41280K562PCBP3
SLC9A1ENSG00000090020.6836.93340419.255400.9972015.7887013.95560K562POLR2G
SLC9A1ENSG00000090020.6387.63830523.49620-0.433502.493801.71900K562PPIG
SLC9A1ENSG00000090020.6474.70010254.587600.898806.951505.76170K562PRPF8
SLC9A1ENSG00000090020.6846.56540659.783200.359502.962402.11680K562PUF60
SLC9A1ENSG00000090020.6853.48540687.613200.311702.762501.80390K562PUM2
SLC9A1ENSG00000090020.6384.97710615.55290-0.677105.321304.60030K562PUS1
SLC9A1ENSG00000090020.6357.28310599.75020-0.747308.147307.15870K562RBM15
SLC9A1ENSG00000090020.6373.14710183.306601.025409.547607.83970K562RBM22
SLC9A1ENSG00000090020.6359.59460244.219300.558102.597901.62950K562RPS3
SLC9A1ENSG00000090020.6724.74970533.006500.443202.660901.86100K562SF3A3
SLC9A1ENSG00000090020.6615.62550378.370700.702205.113903.77010K562SF3B1
SLC9A1ENSG00000090020.6169.32500109.441600.629502.718001.87080K562SF3B4
SLC9A1ENSG00000090020.6357.29890245.196800.543102.952901.88330K562SRFBP1
SLC9A1ENSG00000090020.6686.53730546.067300.330202.424501.54130K562SRPK2
SLC9A1ENSG00000090020.6392.36430187.483501.0653010.254508.90750K562SRSF1
SLC9A1ENSG00000090020.6384.83230235.735000.707002.907601.81910K562SRSF4
SLC9A1ENSG00000090020.6303.05910177.095400.775005.222803.69710K562SRSF5
SLC9A1ENSG00000090020.6444.34070604.96000-0.445202.719601.37470K562SSRP1
SLC9A1ENSG00000090020.647.90410103.35340-1.109403.206401.59280K562TAF15
SLC9A1ENSG00000090020.6396.56450189.718201.063609.866308.39860K562TARDBP
SLC9A1ENSG00000090020.6341.93500183.011800.901707.489806.04000K562TIA1
SLC9A1ENSG00000090020.6300.41120179.653700.741604.630903.15360K562TRA2A
SLC9A1ENSG00000090020.6402.91590260.798700.627402.361301.42920K562UCHL5
SLC9A1ENSG00000090020.6727.59220572.855600.344902.311101.65080K562UPF1
SLC9A1ENSG00000090020.6403.43040265.688700.602503.413102.02320K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC9A1 is not available on ENCORE database.





1 RBPs can affect the splicing of SLC9A1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSSLC9A1ENSG00000090020.6chr1-2744072327440937274407232744077727480473274808520.245000.011560.05977longerK562AQR
A3SSSLC9A1ENSG00000090020.6chr1-2742821527428405274282152742831727428506274286210.177000.018410.08884longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SLC9A1 is not avaliable on ENCORE database.