SLAIN2

General Information

Gene Name       : SLAIN2
Gene ID             : ENSG00000109171.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLAIN2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLAIN2ENSG00000109171.1446.4165.7656.09ENCSR000AEF
HepG2SLAIN2ENSG00000109171.1414.9619.6317.30ENCSR985KAT
K562SLAIN2ENSG00000109171.1462.3177.8770.09ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLAIN2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLAIN2 RNA is bound by 13 proteins.  







eCLIP assay for SLAIN2 is not avaliable on ENCORE database.





13 proteins are bound to SLAIN2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr44842417448424269+3'-UTR3.278373.34065K562IGF2BP1
chr44842640848426471+3'-UTR3.440083.23424HepG2FUBP3
chr44842508048425132+3'-UTR3.659493.09815K562IGF2BP1
chr44838570348385798+5'-UTR,CDS3.969766.36204K562IGF2BP1
chr44838474248384901+5'-UTR,CDS,intron-Proximal5.209568.65790K562IGF2BP2
chr44838474148384852+5'-UTR,CDS,intron-Proximal4.567185.34770HepG2IGF2BP1
chr44837993648380005+5'-UTR,CDS4.808797.35095K562IGF2BP1
chr44834378348343887+CDS3.515934.41267HepG2PPIG
chr44838460148384686+CDS,intron-Proximal3.955093.76295K562IGF2BP2
chr44834397648344025+CDS3.253423.10810K562HNRNPM
chr44842227548422390+CDS3.321914.84889K562IGF2BP1
chr44842225848422343+CDS4.500068.25524K562IGF2BP2
chr44842215248422212+CDS4.394455.51992K562IGF2BP1
chr44842224248422371+CDS3.790504.85120HepG2IGF2BP1
chr44834413348344221+CDS,intron-Proximal4.103113.70058K562CSTF2T
chr44840489248405033+intron-Distal5.022346.51010K562MATR3
chr44840489148404948+intron-Distal3.784894.81844HepG2SUGP2
chr44840527648405314+intron-Distal3.985843.79098HepG2SUGP2
chr44840150748401559+intron-Distal4.851055.76606K562EXOSC5
chr44841999148420072+intron-Distal4.164773.59909K562EXOSC5
chr44840165148401693+intron-Distal4.214543.01445K562EXOSC5
chr44840152248401611+intron-Distal3.449453.59301K562HNRNPM
chr44834428448344337+intron-Distal4.282284.73785K562TIA1
chr44840426448404321+intron-Distal3.719035.20902K562EXOSC5
chr44840608548406132+intron-Distal4.446834.51299HepG2SUGP2
chr44840157848401599+intron-Distal3.961533.30687K562EXOSC5
chr44840137048401426+intron-Distal4.749735.12361K562EXOSC5
chr44840569948405731+intron-Distal4.111274.03915HepG2SUGP2
chr44840589548405956+intron-Distal4.273263.78432HepG2MATR3
chr44840327248403334+intron-Distal5.2603918.42033K562EXOSC5
chr44840214348402179+intron-Distal4.083026.41051K562EXOSC5
chr44840743748407501+intron-Distal3.088733.35050HepG2SUGP2
chr44840490648405044+intron-Distal3.458824.86246K562HNRNPM
chr44837407148374149+intron-Distal4.654185.85450K562HNRNPL
chr44840259748402660+intron-Distal5.146846.73640K562EXOSC5
chr44840320948403264+intron-Distal3.416024.46810K562EXOSC5
chr44840234048402375+intron-Distal4.141877.31419K562EXOSC5
chr44840593348405978+intron-Distal3.514954.57452HepG2SUGP2
chr44841471148414850+intron-Distal4.974635.58608K562QKI
chr44834438248344449+intron-Distal3.936813.35044K562HNRNPM
chr44834428448344360+intron-Distal4.436825.40707K562CSTF2T
chr44842010648420214+intron-Distal5.365516.40067K562PTBP1
chr44840588348405937+intron-Distal4.698204.78076K562HNRNPM
chr44840467148404744+intron-Distal3.854984.81844HepG2SUGP2
chr44840368648403733+intron-Distal4.868255.12432K562EXOSC5
chr44840127548401312+intron-Distal3.903793.01456K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLAIN2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLAIN2 is not available on ENCORE database.

  • 73 RBPs can affect the levels of SLAIN2.  








The Knockdown/knockout RNA-Seq assay for SLAIN2 is not available on ENCORE database.





73 RBPs can affect the gene expression of SLAIN2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLAIN2ENSG00000109171.10975.062501287.73720-0.401302.576001.66690HepG2ABCF1
SLAIN2ENSG00000109171.10721.17170895.95870-0.313103.129602.48930HepG2ACO1
SLAIN2ENSG00000109171.10586.44560769.82600-0.392502.532001.57730HepG2ADAR
SLAIN2ENSG00000109171.10981.508901239.30420-0.336501.824301.38240HepG2AKAP1
SLAIN2ENSG00000109171.10757.36160900.22060-0.249302.003201.33670HepG2AKAP8L
SLAIN2ENSG00000109171.10443.48380722.06080-0.703204.756903.52930HepG2BCCIP
SLAIN2ENSG00000109171.101160.775701614.89110-0.476303.153302.10780HepG2CCAR1
SLAIN2ENSG00000109171.10553.02160895.82710-0.6959012.7310011.51490HepG2CKAP4
SLAIN2ENSG00000109171.10815.585301060.64540-0.379002.903001.77200HepG2CPSF7
SLAIN2ENSG00000109171.10578.17090789.41260-0.449303.451602.31480HepG2YBX3
SLAIN2ENSG00000109171.101219.20260950.570800.359003.863603.12670HepG2CELF1
SLAIN2ENSG00000109171.10644.77960828.66240-0.362004.049303.06410HepG2DDX19B
SLAIN2ENSG00000109171.10487.17320645.85630-0.406802.765002.08680HepG2DDX21
SLAIN2ENSG00000109171.10492.57220631.69760-0.358902.404901.55880HepG2DDX24
SLAIN2ENSG00000109171.10518.08710709.91180-0.454402.231401.53000HepG2DDX55
SLAIN2ENSG00000109171.10794.237201019.79240-0.360601.986501.45570HepG2DDX6
SLAIN2ENSG00000109171.10820.919001083.40910-0.400302.434201.83280HepG2EIF4A3
SLAIN2ENSG00000109171.10698.743401054.84740-0.594203.816803.01380HepG2EIF4B
SLAIN2ENSG00000109171.101252.731001008.371900.312903.185402.30000HepG2EIF4G1
SLAIN2ENSG00000109171.10762.12750965.96870-0.341902.386401.62840HepG2EIF4G2
SLAIN2ENSG00000109171.10760.892001115.61170-0.552105.058203.62420HepG2ESF1
SLAIN2ENSG00000109171.10577.18680875.56780-0.601206.450805.17750HepG2EWSR1
SLAIN2ENSG00000109171.10868.48070665.658800.383603.026102.20720HepG2FUBP3
SLAIN2ENSG00000109171.10798.620001093.10900-0.452903.416102.65220HepG2FXR1
SLAIN2ENSG00000109171.10732.278001014.02170-0.469603.282602.56120HepG2G3BP1
SLAIN2ENSG00000109171.10845.753001076.51030-0.348102.240001.44250HepG2G3BP2
SLAIN2ENSG00000109171.10445.84410589.74360-0.403502.258701.45640HepG2GEMIN5
SLAIN2ENSG00000109171.10732.838701444.69790-0.979207.841306.79920HepG2GPKOW
SLAIN2ENSG00000109171.10625.20130939.37300-0.587408.273106.81660HepG2HNRNPA2B1
SLAIN2ENSG00000109171.10799.908501026.78220-0.360202.442101.78400HepG2HNRNPK
SLAIN2ENSG00000109171.10794.31640931.15400-0.229302.090001.49370HepG2HNRNPL
SLAIN2ENSG00000109171.10699.37810897.27160-0.359502.588101.66750HepG2HNRNPM
SLAIN2ENSG00000109171.10645.72690864.76970-0.421403.027702.39580HepG2HNRNPU
SLAIN2ENSG00000109171.10858.239001093.49060-0.349502.113601.53740HepG2MAGOH
SLAIN2ENSG00000109171.10818.473801099.61160-0.426002.705802.08120HepG2MATR3
SLAIN2ENSG00000109171.10855.924001125.51440-0.395002.519901.91390HepG2NCBP2
SLAIN2ENSG00000109171.10877.580801222.38190-0.478102.458701.75300HepG2NSUN2
SLAIN2ENSG00000109171.10656.165501002.34720-0.611305.326704.33540HepG2PABPC4
SLAIN2ENSG00000109171.101768.79580821.464201.106409.503508.25080HepG2RAVER1
SLAIN2ENSG00000109171.101057.062701534.40910-0.537603.969102.96400HepG2RBM15
SLAIN2ENSG00000109171.10635.542501077.99890-0.7623012.4174011.48070HepG2RBM22
SLAIN2ENSG00000109171.101234.04610969.008700.348703.039802.33690HepG2RBM25
SLAIN2ENSG00000109171.10643.801701097.17760-0.7691013.5931012.56230HepG2NELFE
SLAIN2ENSG00000109171.10866.620101021.93410-0.237801.842601.32530HepG2RECQL
SLAIN2ENSG00000109171.10754.29440541.870900.477103.149502.31840HepG2RRP9
SLAIN2ENSG00000109171.10592.17230837.63910-0.500302.911701.92750HepG2SMNDC1
SLAIN2ENSG00000109171.10581.54620955.26730-0.7160012.1852010.99780HepG2SRSF5
SLAIN2ENSG00000109171.10730.44900871.62100-0.254902.115301.61960HepG2SRSF9
SLAIN2ENSG00000109171.10733.670501057.17580-0.527007.792507.01700HepG2SSB
SLAIN2ENSG00000109171.10449.91220669.74970-0.574003.669402.38530HepG2STIP1
SLAIN2ENSG00000109171.10628.196501086.43010-0.7903017.3810016.03770HepG2SUCLG1
SLAIN2ENSG00000109171.10775.108001343.46460-0.793506.189105.16590HepG2TARDBP
SLAIN2ENSG00000109171.10743.498701158.36650-0.639702.520601.49780HepG2TBRG4
SLAIN2ENSG00000109171.101414.331101112.440100.346302.524401.92200HepG2U2AF1
SLAIN2ENSG00000109171.10971.080801200.45940-0.305903.128002.02190HepG2UTP18
SLAIN2ENSG00000109171.10376.57690695.71090-0.885507.897606.68400HepG2XRN2
SLAIN2ENSG00000109171.10667.10050916.26670-0.457906.143105.20450HepG2ZC3H8
SLAIN2ENSG00000109171.102165.187601738.409900.316604.245303.56850K562AGGF1
SLAIN2ENSG00000109171.102371.241001767.182500.424104.150903.46040K562AQR
SLAIN2ENSG00000109171.101519.585802040.99550-0.425605.166404.10160K562CPSF6
SLAIN2ENSG00000109171.101620.096401391.281000.219602.025201.39260K562EIF2S2
SLAIN2ENSG00000109171.10894.123501128.35810-0.335702.403601.63700K562EIF4A3
SLAIN2ENSG00000109171.101553.125201891.23070-0.284202.181301.42620K562FIP1L1
SLAIN2ENSG00000109171.101046.088101760.25610-0.750809.643507.82400K562FTO
SLAIN2ENSG00000109171.101395.116601173.452700.249502.253601.69730K562FXR1
SLAIN2ENSG00000109171.101247.684101854.06040-0.571407.789406.50800K562GRSF1
SLAIN2ENSG00000109171.101103.150001421.87340-0.366203.345102.41390K562MAGOH
SLAIN2ENSG00000109171.102661.939502150.616500.307602.569701.69900K562MBNL1
SLAIN2ENSG00000109171.101296.284201699.22190-0.390506.212705.04250K562MTPAP
SLAIN2ENSG00000109171.101525.463401888.06440-0.307705.378604.38890K562NSUN2
SLAIN2ENSG00000109171.101559.783102146.80500-0.460804.760003.63970K562PPIG
SLAIN2ENSG00000109171.10847.928301108.39650-0.386503.201602.21710K562PSIP1
SLAIN2ENSG00000109171.103694.504902760.898000.420104.658103.60230K562PUF60
SLAIN2ENSG00000109171.102651.998501794.146100.563706.601305.80440K562PUS1
SLAIN2ENSG00000109171.10797.758001394.07720-0.8053010.773808.57600K562NELFE
SLAIN2ENSG00000109171.101509.529301255.775000.265402.255901.51350K562SYNCRIP
SLAIN2ENSG00000109171.10997.849401370.62660-0.457904.052903.19050K562TARDBP
SLAIN2ENSG00000109171.10837.678401220.09250-0.542505.544303.26260K562TBRG4
SLAIN2ENSG00000109171.10992.668601322.10520-0.413504.207203.16720K562TIA1
SLAIN2ENSG00000109171.101492.945601171.829400.349303.472102.57290K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLAIN2 is not available on ENCORE database.





18 RBPs can affect the splicing of SLAIN2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESLAIN2ENSG00000109171.10chr4+4839659248396670483856634838580148422141484224600.158000.001040.07911includedHepG2G3BP1
SESLAIN2ENSG00000109171.10chr4+4839659248396670483856634838580148422141484224600.241000.000000.00002includedK562SRSF1
SESLAIN2ENSG00000109171.10chr4+483965924839667048385663483858014842214148422460-0.106000.000150.00704excludedK562AKAP8L
SESLAIN2ENSG00000109171.10chr4+4839659248396670483856634838580148422141484224600.166000.000060.02707includedK562PUM1
SESLAIN2ENSG00000109171.10chr4+4839659248396670483856634838580148422141484224600.141000.000010.00153includedK562FMR1
SESLAIN2ENSG00000109171.10chr4+4839659248396670483856634838580148422141484224600.128000.006370.06433includedHepG2U2AF2
SESLAIN2ENSG00000109171.10chr4+4839659248396670483856634838580148422141484224600.145000.000090.05269includedHepG2SUGP2
SESLAIN2ENSG00000109171.10chr4+483965924839667048385663483858014842214148422460-0.154000.000000.00000excludedK562PUS1
SESLAIN2ENSG00000109171.10chr4+4839659248396670483856634838580148422141484224600.321000.000000.00016includedHepG2SFPQ
SESLAIN2ENSG00000109171.10chr4+483965924839667048385663483858014842214148422460-0.135000.000000.00001excludedK562HNRNPM
SESLAIN2ENSG00000109171.10chr4+4839659248396670483856634838580148422141484224600.124000.000170.05404includedK562PPIL4
SESLAIN2ENSG00000109171.10chr4+4839659248396670483856634838580148422141484224600.243000.001000.08202includedHepG2SUPV3L1
SESLAIN2ENSG00000109171.10chr4+483965924839667048385663483858014842214148422460-0.089000.002270.05187excludedK562AGGF1
SESLAIN2ENSG00000109171.10chr4+4839659248396670483856634838580148422141484224600.130000.000080.01472includedK562CPSF6
SESLAIN2ENSG00000109171.10chr4+4839659248396670483856634838580148422141484224600.165000.000000.00004includedK562SF3B1
SESLAIN2ENSG00000109171.10chr4+4839659248396670483856634838580148422141484224600.213000.000030.00856includedHepG2KHSRP
SESLAIN2ENSG00000109171.10chr4+483965924839667048385663483858014842214148422460-0.100000.000240.01343excludedK562PTBP1
A3SSSLAIN2ENSG00000109171.10chr4+4837180048371911483718654837191148343338483441450.078000.004830.02799longerK562AQR
RISLAIN2ENSG00000109171.10chr4+483845844838494448384584483846564838474448384944-0.090000.002890.03298excludedK562AGGF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SLAIN2 is not avaliable on ENCORE database.