SGCE

General Information

Gene Name       : SGCE
Gene ID             : ENSG00000127990.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SGCE)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SGCEENSG00000127990.1744.9740.5742.77ENCSR000AEF
HepG2SGCEENSG00000127990.1731.4636.9834.22ENCSR985KAT
K562SGCEENSG00000127990.170.070.120.10ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SGCE is not avaliable on ENCORE database.



Proteins bound to RNA
  • SGCE RNA is bound by 12 proteins.  







eCLIP assay for SGCE is not avaliable on ENCORE database.





12 proteins are bound to SGCE RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr79425909594259178-3'-UTR,CDS,intron-Distal,intron-Proximal3.514698.01175HepG2U2AF2
chr79428539594285458-5'-UTR,CDS,intron-Distal,intron-Proximal3.668427.52205HepG2NCBP2
chr79428535194285497-5'-UTR,CDS,intron-Distal,intron-Proximal4.877517.66618HepG2PRPF4
chr79428532194285410-CDS,intron-Distal3.8970922.25719HepG2DDX3X
chr79428524794285311-CDS,intron-Distal5.170717.59497HepG2PRPF8
chr79426734694267419-intron-Distal3.379304.14346HepG2SUGP2
chr79425928494259340-intron-Distal3.392643.55754HepG2U2AF2
chr79428496994285036-intron-Distal3.909214.74496HepG2DDX59
chr79427067694270759-intron-Distal3.755695.81617HepG2QKI
chr79427083494270905-intron-Distal3.949984.78196HepG2PTBP1
chr79426889094269047-intron-Distal4.603285.07255HepG2KHSRP
chr79428511494285194-intron-Distal3.278583.59783HepG2HNRNPK
chr79428493594285033-intron-Distal5.148879.27360HepG2HNRNPK
chr79426700694267124-intron-Distal4.068243.68462HepG2MATR3
chr79427074794270808-intron-Distal4.912615.07733HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SGCE is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SGCE is not available on ENCORE database.

  • 48 RBPs can affect the levels of SGCE.  








The Knockdown/knockout RNA-Seq assay for SGCE is not available on ENCORE database.





48 RBPs can affect the gene expression of SGCE :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SGCEENSG00000127990.11952.494701238.48550-0.378802.209601.72810HepG2AKAP1
SGCEENSG00000127990.11719.76510527.350200.448703.200802.56280HepG2BOP1
SGCEENSG00000127990.11937.96510758.354900.306602.354201.63870HepG2CALR
SGCEENSG00000127990.11882.73060667.783100.402504.898804.06140HepG2CKAP4
SGCEENSG00000127990.11380.71330840.88730-1.143209.757708.35680HepG2CNOT7
SGCEENSG00000127990.11753.51270484.129400.638105.660304.70940HepG2CPSF6
SGCEENSG00000127990.11954.041201186.34790-0.314401.849201.32690HepG2DDX3X
SGCEENSG00000127990.11824.57020549.766800.584702.755701.77890HepG2DDX59
SGCEENSG00000127990.11864.94960639.027800.436604.724503.88220HepG2DKC1
SGCEENSG00000127990.11506.52240638.81050-0.334803.033602.35640HepG2DNAJC2
SGCEENSG00000127990.11749.08620979.68100-0.387202.430601.87300HepG2EIF2S1
SGCEENSG00000127990.11669.022201092.42400-0.707407.238306.15540HepG2FXR1
SGCEENSG00000127990.11718.468901013.33390-0.496103.615302.85860HepG2G3BP1
SGCEENSG00000127990.11558.82760723.77400-0.373102.346501.70290HepG2HNRNPC
SGCEENSG00000127990.11762.720901026.20800-0.428103.248102.49190HepG2HNRNPK
SGCEENSG00000127990.11858.69500523.712400.713306.780105.84380HepG2HNRNPLL
SGCEENSG00000127990.11451.73420591.44000-0.388802.417101.52710HepG2HNRNPM
SGCEENSG00000127990.11731.861901036.05120-0.501503.021901.96790HepG2KHSRP
SGCEENSG00000127990.11559.605201124.77980-1.0072012.7013011.39940HepG2NCBP2
SGCEENSG00000127990.11605.17710464.384700.381902.151001.48880HepG2NSUN2
SGCEENSG00000127990.11773.937601034.42230-0.418505.223304.43110HepG2PCBP1
SGCEENSG00000127990.11809.83890633.460600.354303.369502.52310HepG2PRPF4
SGCEENSG00000127990.11875.164501052.53500-0.266202.572302.04180HepG2PTBP1
SGCEENSG00000127990.11664.094501016.39310-0.6140011.4701010.43460HepG2PUM1
SGCEENSG00000127990.11902.42020680.330100.407504.852104.07810HepG2PUS1
SGCEENSG00000127990.11879.300201139.98180-0.374603.745203.03540HepG2QKI
SGCEENSG00000127990.11665.78060907.33190-0.446604.501003.88220HepG2RBM22
SGCEENSG00000127990.11851.893001171.39400-0.459506.150905.39810HepG2NELFE
SGCEENSG00000127990.11866.896701090.95160-0.331702.893002.26420HepG2RECQL
SGCEENSG00000127990.111192.01980792.177700.589403.625302.54500HepG2RPS10
SGCEENSG00000127990.11388.29140564.64550-0.540204.109603.37580HepG2RPS19
SGCEENSG00000127990.111194.05660864.223500.466302.990902.28870HepG2SF3A3
SGCEENSG00000127990.11860.411801095.87560-0.349003.825403.14820HepG2SF3B4
SGCEENSG00000127990.11528.37880746.70050-0.499006.311505.40310HepG2SMN1
SGCEENSG00000127990.11951.93930576.771400.722804.681903.65420HepG2SNRNP70
SGCEENSG00000127990.11800.293201024.80970-0.356803.691903.13870HepG2SRFBP1
SGCEENSG00000127990.11837.131701143.83620-0.450406.310705.66800HepG2SRSF1
SGCEENSG00000127990.111289.96050889.798000.535709.391608.55560HepG2SSB
SGCEENSG00000127990.11921.662901075.14720-0.222202.147501.58670HepG2SUCLG1
SGCEENSG00000127990.11558.63150913.93370-0.710205.293103.46270HepG2SUGP2
SGCEENSG00000127990.11751.98960591.488200.346302.233301.61680HepG2SUPV3L1
SGCEENSG00000127990.11613.321501028.06700-0.7452012.3596011.30360HepG2TAF15
SGCEENSG00000127990.11718.93720944.71460-0.394003.576702.63070HepG2TIA1
SGCEENSG00000127990.11555.55130809.77850-0.543603.010401.47530HepG2TRA2A
SGCEENSG00000127990.11205.94000349.45770-0.762903.535902.68110HepG2UCHL5
SGCEENSG00000127990.11813.24900625.134000.379404.139803.34310HepG2ZC3H8
SGCEENSG00000127990.1112.792600.686404.220102.232401.55000K562GRSF1
SGCEENSG00000127990.1110.822800.654704.047102.078901.35780K562PCBP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SGCE is not available on ENCORE database.





11 RBPs can affect the splicing of SGCE :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESGCEENSG00000127990.11chr7-942290089422903594228086942282759422995794230169-0.079000.002680.04613excludedHepG2U2AF1
SESGCEENSG00000127990.11chr7-9425116094251307942480699424826894252636942527090.058000.001040.02783includedHepG2HNRNPK
SESGCEENSG00000127990.11chr7-942290089422903594228086942282759422995794230169-0.094000.001150.09544excludedHepG2DDX59
SESGCEENSG00000127990.11chr7-942739179427397994259030942591539428530194285439-0.116000.000450.04583excludedHepG2DDX59
SESGCEENSG00000127990.11chr7-9425903094259153942575139425767194285301942854780.192000.000000.00073includedHepG2TBRG4
SESGCEENSG00000127990.11chr7-942686529426876094259030942591539428530194285498-0.090000.001110.07979excludedHepG2TBRG4
SESGCEENSG00000127990.11chr7-942290089422903594228086942282759422995794230169-0.085000.003040.03548excludedHepG2U2AF2
SESGCEENSG00000127990.11chr7-942739179427397994259030942591539428530194285439-0.075000.005150.05441excludedHepG2U2AF2
SESGCEENSG00000127990.11chr7-9426865294268760942590309425915394285301942854980.180000.001970.07465includedHepG2SFPQ
SESGCEENSG00000127990.11chr7-9425903094259153942575139425767194285301942854780.126000.000020.00297includedHepG2FTO
SESGCEENSG00000127990.11chr7-9425903094259153942575139425767194285301942854780.217000.000060.01127includedHepG2PCBP2
SESGCEENSG00000127990.11chr7-942290089422903594228086942282759422995794230169-0.111000.000020.00167excludedHepG2SF3B4
SESGCEENSG00000127990.11chr7-9425116094251307942480699424826894252636942527090.103000.000090.00670includedHepG2HNRNPU
SESGCEENSG00000127990.11chr7-9422724194227316942180009421804494228086942282750.101000.000000.00000includedHepG2HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SGCE is not avaliable on ENCORE database.