RPA3-AS1

General Information

Gene Name       : RPA3-AS1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RPA3-AS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RPA3-AS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RPA3-AS1 RNA is bound by 10 proteins.  







eCLIP assay for RPA3-AS1 is not avaliable on ENCORE database.





10 proteins are bound to RPA3-AS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr780222788022350+intron-Distal3.790804.72639K562KHSRP
chr777448517744920+intron-Distal4.866076.94732K562KHSRP
chr780223648022424+intron-Distal4.173743.66668K562KHSRP
chr780209098020974+intron-Distal,intron-Proximal5.915288.42544K562PTBP1
chr777450207745127+intron-Distal5.3094212.29181K562KHSRP
chr780195628019620+intron-Distal5.422538.88784K562PTBP1
chr780226888022755+intron-Distal4.181713.45805K562KHSRP
chr780139268014018+intron-Distal4.473064.96658K562KHSRP
chr780119618012046+intron-Distal3.646905.63970K562TARDBP
chr777439607744102+intron-Distal3.653463.22908HepG2CSTF2
chr777139077713987+intron-Distal4.379304.86548HepG2SUGP2
chr777283427728397+intron-Distal3.350564.10408K562KHSRP
chr780226158022676+intron-Distal3.138553.28806K562KHSRP
chr780224278022486+intron-Distal3.081883.96958K562KHSRP
chr780182378018303+intron-Distal3.799513.24603K562KHSRP
chr777446997744770+intron-Distal4.070523.45805K562KHSRP
chr777139007713963+intron-Distal3.989463.24322HepG2MATR3
chr777363917736453+intron-Distal4.399103.05187HepG2QKI
chr777386797738752+intron-Distal4.660606.19184HepG2ILF3
chr778020107802076+intron-Distal3.329575.60020HepG2QKI
chr777284097728489+intron-Distal3.482085.40624K562KHSRP
chr777141117714212+intron-Distal4.457213.86809HepG2SUGP2
chr777267767726952+intron-Distal3.164783.38150K562KHSRP
chr780113688011432+intron-Distal4.176614.48935K562CSTF2T
chr778701517870198+intron-Distal3.685563.30744K562PTBP1
chr777423307742515+intron-Distal4.0311513.08623K562KHSRP
chr777149377715025+intron-Distal4.622296.32237HepG2SUGP2
chr776803997680461+intron-Proximal3.181663.40404HepG2NCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RPA3-AS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RPA3-AS1 is not available on ENCORE database.

  • 57 RBPs can affect the levels of RPA3-AS1.  








The Knockdown/knockout RNA-Seq assay for RPA3-AS1 is not available on ENCORE database.





57 RBPs can affect the gene expression of RPA3-AS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RPA3-AS1ENSG00000219545.5576.13930404.295000.510902.757202.22650HepG2AKAP1
RPA3-AS1ENSG00000219545.5180.66050299.33400-0.728503.040602.05540HepG2BCCIP
RPA3-AS1ENSG00000219545.5476.29240317.826300.583503.691302.80690HepG2CIRBP
RPA3-AS1ENSG00000219545.5262.45030387.31500-0.561502.922502.28190HepG2DDX3X
RPA3-AS1ENSG00000219545.5142.96090263.34550-0.881303.612702.49830HepG2DDX59
RPA3-AS1ENSG00000219545.5377.51570237.982200.665604.383903.56780HepG2DKC1
RPA3-AS1ENSG00000219545.5208.28140276.27990-0.407601.999601.42860HepG2DNAJC2
RPA3-AS1ENSG00000219545.5182.14830344.11740-0.917804.961704.05750HepG2EIF4B
RPA3-AS1ENSG00000219545.5248.67840419.34800-0.753905.206204.42830HepG2ETF1
RPA3-AS1ENSG00000219545.5238.23510330.82040-0.473702.100301.51710HepG2G3BP1
RPA3-AS1ENSG00000219545.5151.68750261.05780-0.783304.062802.82580HepG2GNB2L1
RPA3-AS1ENSG00000219545.5201.39730313.04570-0.636303.408102.64520HepG2HNRNPC
RPA3-AS1ENSG00000219545.5222.27810293.93620-0.403102.135601.49880HepG2HNRNPF
RPA3-AS1ENSG00000219545.5260.94720370.92410-0.507403.806003.02330HepG2HNRNPL
RPA3-AS1ENSG00000219545.5352.00510250.886100.488502.346201.76150HepG2HNRNPLL
RPA3-AS1ENSG00000219545.5197.89350310.97680-0.652104.820904.03880HepG2HNRNPU
RPA3-AS1ENSG00000219545.5153.58210315.51520-1.038703.745202.59870HepG2IGF2BP3
RPA3-AS1ENSG00000219545.5213.18960358.70080-0.750604.171603.41220HepG2MATR3
RPA3-AS1ENSG00000219545.5167.28240267.70310-0.678303.586302.66690HepG2MSI2
RPA3-AS1ENSG00000219545.5189.41680367.16420-0.954906.598805.63970HepG2NCBP2
RPA3-AS1ENSG00000219545.5220.93720337.63390-0.611802.805502.19580HepG2PCBP1
RPA3-AS1ENSG00000219545.5199.93530277.36850-0.472302.546201.83620HepG2PPIL4
RPA3-AS1ENSG00000219545.5523.44390385.422200.441502.756502.16100HepG2PUF60
RPA3-AS1ENSG00000219545.5291.27390408.84080-0.489203.141802.42710HepG2PUM2
RPA3-AS1ENSG00000219545.5287.74340372.11540-0.371001.875501.34640HepG2QKI
RPA3-AS1ENSG00000219545.5382.30810250.294700.611002.322601.67320HepG2RAVER1
RPA3-AS1ENSG00000219545.5220.03910308.41210-0.487102.224401.34390HepG2RBM27
RPA3-AS1ENSG00000219545.5222.72850382.33400-0.779504.506903.84750HepG2NELFE
RPA3-AS1ENSG00000219545.5195.11420284.43600-0.543802.506101.74250HepG2RPS2
RPA3-AS1ENSG00000219545.5106.78010224.67100-1.073205.137404.09950HepG2RRP9
RPA3-AS1ENSG00000219545.5206.62700276.94540-0.422602.224601.63560HepG2SAFB2
RPA3-AS1ENSG00000219545.5194.49560288.78470-0.570303.525902.75380HepG2SRSF7
RPA3-AS1ENSG00000219545.5186.02130303.71630-0.707303.830303.20250HepG2SRSF9
RPA3-AS1ENSG00000219545.5475.77020343.764400.468704.033303.43930HepG2SSB
RPA3-AS1ENSG00000219545.5233.70640432.78560-0.8890010.334309.26090HepG2SUCLG1
RPA3-AS1ENSG00000219545.5112.19950196.39600-0.807702.965501.93460HepG2TFIP11
RPA3-AS1ENSG00000219545.5209.77300302.21500-0.526703.016602.49780HepG2TIAL1
RPA3-AS1ENSG00000219545.583.69810251.28870-1.5861010.109707.53520HepG2TRA2A
RPA3-AS1ENSG00000219545.5186.29280304.87050-0.710605.629604.87780HepG2TRIM56
RPA3-AS1ENSG00000219545.5250.35190398.54050-0.670803.429602.49630HepG2UBE2L3
RPA3-AS1ENSG00000219545.5683.53340327.908301.0596021.4221020.25280HepG2ZNF622
RPA3-AS1ENSG00000219545.5351.31690478.79550-0.446602.586002.01420K562AQR
RPA3-AS1ENSG00000219545.5363.91630456.82070-0.328002.006501.43600K562DDX47
RPA3-AS1ENSG00000219545.5156.33610236.37500-0.596403.276401.99670K562EIF4B
RPA3-AS1ENSG00000219545.5149.67710224.94460-0.587702.428101.57550K562FTO
RPA3-AS1ENSG00000219545.5173.58490270.81860-0.641703.382802.73210K562HNRNPC
RPA3-AS1ENSG00000219545.5237.15170345.93990-0.544703.550202.53730K562HNRNPU
RPA3-AS1ENSG00000219545.5279.45040413.23630-0.564402.916401.85450K562IGF2BP2
RPA3-AS1ENSG00000219545.5312.99000420.30330-0.425302.558901.42620K562IGF2BP3
RPA3-AS1ENSG00000219545.5113.41790212.63850-0.906803.844902.73060K562KRR1
RPA3-AS1ENSG00000219545.5333.25730434.26040-0.381902.097301.36040K562MAGOH
RPA3-AS1ENSG00000219545.5145.99340433.37420-1.5697022.3007019.68980K562MATR3
RPA3-AS1ENSG00000219545.5120.12080243.06860-1.016906.583705.20420K562METAP2
RPA3-AS1ENSG00000219545.5204.23970297.88810-0.544503.306002.42520K562MTPAP
RPA3-AS1ENSG00000219545.5563.02080389.336500.532103.543402.94050K562PUS1
RPA3-AS1ENSG00000219545.5304.29470404.54600-0.410802.245901.49310K562RBM22
RPA3-AS1ENSG00000219545.5242.69470425.72440-0.810806.632404.85770K562NELFE
RPA3-AS1ENSG00000219545.5249.46110326.59750-0.388702.083401.36930K562SF3A3
RPA3-AS1ENSG00000219545.5286.02470413.62010-0.532203.431202.64950K562SRSF1
RPA3-AS1ENSG00000219545.5281.18900390.64270-0.474302.693001.66180K562SRSF5
RPA3-AS1ENSG00000219545.5343.75030495.83660-0.528504.376602.52160K562SUCLG1
RPA3-AS1ENSG00000219545.5286.31300403.79120-0.496003.207002.31630K562TIA1
RPA3-AS1ENSG00000219545.5254.90770396.25920-0.636504.350902.92820K562TRA2A
RPA3-AS1ENSG00000219545.5204.24280312.26890-0.612504.477703.42010K562WDR43
RPA3-AS1ENSG00000219545.5418.56480567.23790-0.438503.096901.72190K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RPA3-AS1 is not available on ENCORE database.





7 RBPs can affect the splicing of RPA3-AS1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERPA3-AS1ENSG00000219545.5chr7+7715732771583977129397713084784130078413740.517000.000000.00000includedK562MATR3
SERPA3-AS1ENSG00000219545.5chr7+7715732771583977129397713084784130078413740.115000.000220.02347includedHepG2TBRG4
SERPA3-AS1ENSG00000219545.5chr7+7715732771583977129397713084784130078413740.367000.000390.02079includedHepG2MATR3
SERPA3-AS1ENSG00000219545.5chr7+7715732771583977129397713084784130078413740.065000.001110.09237includedHepG2LARP4
SERPA3-AS1ENSG00000219545.5chr7+7715732771583977129397713084784130078413740.281000.000030.00123includedHepG2SRSF1
SERPA3-AS1ENSG00000219545.5chr7+7715732771583977129397713084784130078413740.070000.002840.06853includedHepG2SF3A3
SERPA3-AS1ENSG00000219545.5chr7+7715732771583977129397713084784130078413740.205000.000520.05666includedHepG2TAF15
SERPA3-AS1ENSG00000219545.5chr7+771573277158397712939771308478413007841374-0.114000.000270.04509excludedK562ZC3H8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RPA3-AS1 is not avaliable on ENCORE database.