RP11-517H2.6

General Information

Gene Name       : RP11-517H2.6
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-517H2.6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-517H2.6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RP11-517H2.6 RNA is bound by 33 proteins.  







eCLIP assay for RP11-517H2.6 is not avaliable on ENCORE database.





33 proteins are bound to RP11-517H2.6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr6167419409167419507+intron-Distal3.739983.06676K562U2AF2
chr6167453391167453415+CDS,intron-Distal,intron-Proximal3.199468.23663HepG2BCLAF1
chr6167415295167415475+intron-Distal3.310893.98966K562HNRNPK
chr6167445961167446025+intron-Distal,intron-Proximal4.262018.75974K562KHSRP
chr6167413037167413153+intron-Distal,intron-Proximal4.5979624.20336HepG2EFTUD2
chr6167431080167431142+intron-Distal4.656693.60940HepG2HNRNPC
chr6167538520167538618+intron-Distal4.0679810.48875HepG2HNRNPL
chr6167435457167435503+intron-Distal3.986467.40091HepG2U2AF2
chr6167440148167440207+intron-Distal,intron-Proximal4.1269210.07081HepG2EFTUD2
chr6167431501167431578+intron-Distal3.557075.42728HepG2HNRNPM
chr6167436538167436680+intron-Distal4.257928.43438HepG2EXOSC5
chr6167426986167427115+CDS,intron-Distal,intron-Proximal4.216034.96173HepG2U2AF1
chr6167413245167413304+intron-Distal5.967839.61799HepG2EFTUD2
chr6167453997167454092+3'-UTR,intron-Distal3.438206.68612HepG2KHSRP
chr6167421701167421765+intron-Distal4.345983.74583HepG2PTBP1
chr6167413153167413224+intron-Distal4.509959.63445HepG2EFTUD2
chr6167419365167419402+intron-Distal3.422343.89405HepG2PTBP1
chr6167420499167420577+intron-Distal3.559774.73075K562MATR3
chr6167414787167414833+intron-Distal4.036755.36899HepG2PTBP1
chr6167441430167441504+intron-Distal,intron-Proximal4.189933.62366HepG2HNRNPM
chr6167454137167454234+3'-UTR,intron-Distal3.8564110.80633K562KHSRP
chr6167445022167445071+intron-Distal3.129544.61989HepG2SUGP2
chr6167414629167414665+intron-Distal4.450824.30178K562PTBP1
chr6167417923167417999+intron-Distal,intron-Proximal3.268776.34474K562EFTUD2
chr6167438512167438555+intron-Distal3.775063.24603K562KHSRP
chr6167440115167440214+intron-Distal,intron-Proximal3.6882412.86780K562EFTUD2
chr6167421700167421763+intron-Distal3.746993.97268K562PTBP1
chr6167435658167435709+intron-Distal3.069466.06877HepG2U2AF2
chr6167453403167453471+3'-UTR,CDS,intron-Distal4.788647.41350HepG2GRWD1
chr6167414962167415007+intron-Distal3.703893.68462HepG2MATR3
chr6167435389167435410+intron-Distal4.2849411.85698K562KHSRP
chr6167430209167430269+intron-Distal3.901535.39069K562TARDBP
chr6167538274167538347+intron-Distal3.877488.93230HepG2HNRNPL
chr6167421645167421728+intron-Distal3.896753.33944K562MATR3
chr6167415249167415342+intron-Distal4.654036.48506K562MATR3
chr6167538347167538391+intron-Distal3.970278.93849HepG2HNRNPL
chr6167435656167435705+intron-Distal3.904963.35727HepG2FUS
chr6167538453167538520+intron-Distal3.331025.08563HepG2HNRNPL
chr6167428702167428734+intron-Distal3.169614.23271HepG2HNRNPM
chr6167424438167424494+intron-Distal,intron-Proximal5.300384.75882HepG2RBM22
chr6167414787167414833+intron-Distal5.213097.72823K562PTBP1
chr6167435380167435450+intron-Distal3.029445.03466HepG2KHSRP
chr6167445877167445961+intron-Distal5.174608.72817K562KHSRP
chr6167414203167414333+intron-Distal4.8203912.74513K562MATR3
chr6167444120167444244+intron-Distal4.652235.32928K562MATR3
chr6167445153167445202+intron-Distal3.084263.27745HepG2SUGP2
chr6167436599167436698+intron-Distal4.205393.91585HepG2PRPF4
chr6167445334167445399+intron-Distal3.342757.80569HepG2SUGP2
chr6167444232167444265+intron-Distal3.593725.30446HepG2SUGP2
chr6167414921167414984+intron-Distal4.350193.98115K562MATR3
chr6167538471167538621+intron-Distal3.125543.92862HepG2AGGF1
chr6167421362167421439+intron-Distal3.152233.32889K562MATR3
chr6167435796167435846+intron-Distal,intron-Proximal4.959959.08942K562HNRNPL
chr6167444944167444973+intron-Distal3.466603.84025HepG2SUGP2
chr6167447614167447719+intron-Distal3.080923.33439K562TARDBP
chr6167437581167437680+intron-Distal5.031625.42395HepG2HNRNPM
chr6167439910167439955+intron-Distal,intron-Proximal4.444053.35169HepG2U2AF2
chr6167421511167421604+intron-Distal3.822145.63970K562TARDBP
chr6167440110167440249+intron-Distal,intron-Proximal4.0001212.44852K562PRPF8
chr6167427059167427079+intron-Distal,intron-Proximal3.6410710.38189HepG2RBFOX2
chr6167414218167414285+intron-Distal4.5360211.32673HepG2MATR3
chr6167455800167455889+3'-UTR,intron-Distal3.422153.71286HepG2ZC3H11A
chr6167427079167427135+intron-Distal,intron-Proximal3.8775412.39353HepG2RBFOX2
chr6167435410167435453+intron-Distal4.5803610.06297K562KHSRP
chr6167426980167427035+CDS,intron-Distal,intron-Proximal3.912884.39974K562GPKOW
chr6167453681167453743+3'-UTR,intron-Distal4.314177.43709HepG2SF3A3
chr6167419290167419365+intron-Distal4.404829.54872HepG2PTBP1
chr6167425168167425230+intron-Distal3.860783.47425HepG2U2AF1
chr6167414325167414376+intron-Distal3.515135.10681HepG2SUGP2
chr6167424871167424929+intron-Distal4.169803.32080HepG2FUBP3
chr6167444161167444255+intron-Distal3.022013.04658HepG2MATR3
chr6167420524167420577+intron-Distal4.520243.27829HepG2MATR3
chr6167414226167414325+intron-Distal3.362839.74232HepG2SUGP2
chr6167538391167538453+intron-Distal3.816148.68938HepG2HNRNPL
chr6167454029167454137+3'-UTR,intron-Distal3.3854911.00433K562KHSRP
chr6167415050167415122+intron-Distal3.336338.28668HepG2SUGP2
chr6167424859167424962+intron-Distal4.1717110.65371K562TARDBP
chr6167425398167425461+intron-Distal3.308605.30470HepG2XPO5
chr6167435771167435845+intron-Distal,intron-Proximal3.689989.70421K562AGGF1
chr6167421765167421834+intron-Distal3.885176.24904HepG2PTBP1
chr6167427062167427140+intron-Distal,intron-Proximal3.171416.09421K562RBFOX2
chr6167428950167429019+intron-Distal3.409353.64140HepG2SFPQ
chr6167455803167455859+3'-UTR,intron-Distal3.770075.95946K562KHSRP
chr6167421695167421841+intron-Distal3.036024.81073HepG2MATR3
chr6167427015167427140+CDS,intron-Distal,intron-Proximal3.066594.09918K562XRN2
chr6167454111167454172+3'-UTR,intron-Distal4.759315.34107HepG2KHSRP
chr6167436656167436717+intron-Distal3.957253.01445K562EXOSC5
chr6167413566167413636+CDS,intron-Proximal5.0024216.12323HepG2PRPF8
chr6167413539167413591+CDS,intron-Proximal3.359633.57887K562U2AF2
chr6167417925167417986+intron-Distal,intron-Proximal3.282303.78918HepG2CDC40
chr6167413568167413604+CDS,intron-Proximal4.073678.46997HepG2PPIG
chr6167412985167413013+CDS,intron-Proximal3.745556.92683HepG2PPIG
chr6167413024167413035+intron-Proximal5.688278.88118K562AQR
chr6167438266167438361+CDS,intron-Proximal3.677549.49686K562GRWD1
chr6167412864167413012+5'-UTR,CDS,intron-Proximal3.373835.98834HepG2SRSF9
chr6167424212167424275+intron-Distal,intron-Proximal3.487663.68839K562KHSRP
chr6167413001167413024+CDS,intron-Proximal4.626137.50107K562AQR
chr6167435852167435899+CDS,intron-Proximal3.852725.93727K562SF3B4
chr6167447440167447460+CDS,intron-Proximal3.6387110.10467HepG2BCLAF1
chr6167424382167424442+intron-Distal,intron-Proximal3.942344.89208K562AQR
chr6167412979167413049+CDS,intron-Proximal4.3985929.56572HepG2PRPF8
chr6167435847167435890+intron-Proximal3.254154.43202K562HNRNPL
chr6167424381167424476+intron-Distal,intron-Proximal3.127144.48980K562PRPF8
chr6167413577167413636+CDS,intron-Proximal3.995625.99968K562PRPF8
chr6167438268167438381+CDS,intron-Proximal3.2268218.41176HepG2GRWD1
chr6167413035167413048+intron-Proximal4.853343.70761K562AQR
chr6167413547167413568+CDS,intron-Proximal3.459263.95327HepG2PPIG
chr6167412985167413003+CDS,intron-Proximal3.182607.33264HepG2GRWD1
chr6167438198167438246+intron-Proximal4.332274.27476HepG2AQR
chr6167438228167438290+CDS,intron-Proximal3.916246.90628HepG2SF3A3
chr6167424418167424481+intron-Distal,intron-Proximal3.905825.35561K562RBM22
chr6167435859167435946+CDS,intron-Proximal3.579884.05798K562U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-517H2.6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-517H2.6 is not available on ENCORE database.

  • 38 RBPs can affect the levels of RP11-517H2.6.  








The Knockdown/knockout RNA-Seq assay for RP11-517H2.6 is not available on ENCORE database.





38 RBPs can affect the gene expression of RP11-517H2.6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-517H2.6ENSG00000272980.145.13850135.52020-1.586109.630108.63590HepG2ACO1
RP11-517H2.6ENSG00000272980.188.64710136.18040-0.619402.290101.58570HepG2AKAP8L
RP11-517H2.6ENSG00000272980.178.52820171.42530-1.126306.608605.61890HepG2AUH
RP11-517H2.6ENSG00000272980.126.87560146.46800-2.446204.713703.71030HepG2CNOT7
RP11-517H2.6ENSG00000272980.1116.5903048.278301.271904.649702.73800HepG2CSTF2T
RP11-517H2.6ENSG00000272980.145.28440101.59680-1.165804.339303.56710HepG2CELF1
RP11-517H2.6ENSG00000272980.1113.0626045.374101.317105.027704.16940HepG2EIF4A3
RP11-517H2.6ENSG00000272980.1103.7860044.137901.233403.636702.85390HepG2EIF4B
RP11-517H2.6ENSG00000272980.182.57520196.83810-1.253208.346207.39920HepG2ETF1
RP11-517H2.6ENSG00000272980.167.7584010.118902.743306.138504.99110HepG2FUBP3
RP11-517H2.6ENSG00000272980.1109.4521045.716901.259403.016402.29310HepG2FXR1
RP11-517H2.6ENSG00000272980.192.8758045.014501.044802.304301.49490HepG2G3BP2
RP11-517H2.6ENSG00000272980.127.7990082.37140-1.567102.228301.64360HepG2HNRNPA1
RP11-517H2.6ENSG00000272980.132.8209091.60800-1.480902.243501.61250HepG2HNRNPC
RP11-517H2.6ENSG00000272980.128.8033091.00340-1.659702.556301.97350HepG2HNRNPU
RP11-517H2.6ENSG00000272980.1159.2672043.383201.876105.870504.35970HepG2KHSRP
RP11-517H2.6ENSG00000272980.179.21330123.90010-0.645402.363201.42030HepG2KIF1C
RP11-517H2.6ENSG00000272980.150.04080133.79940-1.418902.642601.77950HepG2PABPC1
RP11-517H2.6ENSG00000272980.1100.9444041.976201.265804.534303.62190HepG2PABPC4
RP11-517H2.6ENSG00000272980.1117.9570065.094200.857602.184201.46380HepG2PRPF8
RP11-517H2.6ENSG00000272980.156.94480138.04020-1.277507.131206.22010HepG2PUS1
RP11-517H2.6ENSG00000272980.1111.1099060.044000.887803.054002.40340HepG2QKI
RP11-517H2.6ENSG00000272980.1110.02540164.51630-0.580402.389901.89900HepG2RBM22
RP11-517H2.6ENSG00000272980.199.3882057.498500.789402.364101.78810HepG2RECQL
RP11-517H2.6ENSG00000272980.119.8033043.24280-1.126701.939801.41730HepG2RPS19
RP11-517H2.6ENSG00000272980.1150.3171099.149000.600202.384701.72690HepG2SLBP
RP11-517H2.6ENSG00000272980.1107.88600185.80810-0.784303.986303.41690HepG2SRFBP1
RP11-517H2.6ENSG00000272980.1106.4547054.188400.974103.642203.01380HepG2TAF15
RP11-517H2.6ENSG00000272980.117.6430089.21370-2.338202.730402.16860HepG2TRIM56
RP11-517H2.6ENSG00000272980.131.7546068.20020-1.102802.379101.79270HepG2U2AF1
RP11-517H2.6ENSG00000272980.116.0534052.03420-1.696603.260702.37260K562EIF4A3
RP11-517H2.6ENSG00000272980.121.5511054.11470-1.328301.956701.43050K562FXR1
RP11-517H2.6ENSG00000272980.12.4130031.86260-3.722901.949801.43740K562HNRNPC
RP11-517H2.6ENSG00000272980.142.5228072.55600-0.770902.068901.33710K562MAGOH
RP11-517H2.6ENSG00000272980.19.6559042.62380-2.142204.386102.65140K562NONO
RP11-517H2.6ENSG00000272980.135.4356070.49270-0.992302.752102.08950K562PTBP1
RP11-517H2.6ENSG00000272980.122.3027069.10630-1.631604.858303.92600K562SRSF1
RP11-517H2.6ENSG00000272980.120.2219069.94020-1.790205.805004.75540K562TARDBP
RP11-517H2.6ENSG00000272980.124.1354067.46520-1.483004.240703.19500K562TIA1
RP11-517H2.6ENSG00000272980.128.7667064.08790-1.155702.948902.12010K562U2AF2
RP11-517H2.6ENSG00000272980.116.1435043.19510-1.419902.457201.50400K562UCHL5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-517H2.6 is not available on ENCORE database.





8 RBPs can affect the splicing of RP11-517H2.6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERP11-517H2.6ENSG00000272980.1chr6+167416680167417889167413547167413601167424300167424381-0.051000.003630.04102excludedHepG2U2AF2
SERP11-517H2.6ENSG00000272980.1chr6+167416680167417889167413547167413601167424300167424381-0.078000.000790.01412excludedK562PUS1
SERP11-517H2.6ENSG00000272980.1chr6+167416680167417889167413547167413601167424300167424381-0.163000.000220.00639excludedK562U2AF1
RIRP11-517H2.6ENSG00000272980.1chr6+1674166801674178891674166801674167351674177511674178890.470000.000130.00247includedHepG2SF3A3
RIRP11-517H2.6ENSG00000272980.1chr6+167416680167417889167416680167416735167417751167417889-0.360000.009970.09932excludedK562U2AF2
MXERP11-517H2.6ENSG00000272980.1chr6+1674135471674136011674166801674167351674128921674130021674177511674178890.140000.000020.000991includedHepG2MATR3
MXERP11-517H2.6ENSG00000272980.1chr6+1674135471674136011674166801674167351674128921674130021674177511674178890.133000.000830.053361includedHepG2AKAP1
MXERP11-517H2.6ENSG00000272980.1chr6+167416680167417889167424300167424381167413547167413601167435896167436123-0.164000.001330.045802includedHepG2SUPV3L1
MXERP11-517H2.6ENSG00000272980.1chr6+1674166801674178891674243001674243811674135471674136011674358961674361230.166000.004990.074551includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RP11-517H2.6 is not avaliable on ENCORE database.