RP11-321N4.5

General Information

Gene Name       : RP11-321N4.5
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-321N4.5)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-321N4.5 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RP11-321N4.5 RNA is bound by 28 proteins.  







eCLIP assay for RP11-321N4.5 is not avaliable on ENCORE database.





28 proteins are bound to RP11-321N4.5 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr68628191886281977-3'-UTR,CDS,intron-Distal,intron-Proximal4.341365.63851K562SF3B4
chr68628400986284097-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.785207.37356K562DDX3X
chr68626770586267754-3'-UTR,CDS,intron-Distal5.568988.86847HepG2BCLAF1
chr68628205586282092-3'-UTR,CDS,intron-Distal,intron-Proximal3.102543.85381HepG2BCLAF1
chr68627504986275084-3'-UTR,CDS,intron-Distal,intron-Proximal4.266627.53358HepG2BCLAF1
chr68627510186275138-3'-UTR,CDS,intron-Distal,intron-Proximal4.120699.37631HepG2BCLAF1
chr68627725086277275-3'-UTR,CDS,intron-Distal,intron-Proximal3.791074.74886HepG2BCLAF1
chr68628187186281935-3'-UTR,CDS,intron-Distal,intron-Proximal4.012853.60441HepG2GRWD1
chr68628188686281974-3'-UTR,CDS,intron-Distal,intron-Proximal4.635779.56439K562EFTUD2
chr68632255086322633-3'-UTR,5'-UTR,CDS,intron-Distal3.457463.95966K562FUS
chr68632253986322633-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.659434.83675HepG2G3BP1
chr68632259386322657-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.127775.04216K562U2AF1
chr68632251586322599-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.213803.69997K562GRWD1
chr68632253386322606-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.741285.35719HepG2GRWD1
chr68632259886322659-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.092117.59053K562U2AF2
chr68632254486322588-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.898134.09885HepG2BCLAF1
chr68632479986324861-CDS,intron-Distal4.498784.53069HepG2CDC40
chr68632263386322764-CDS,intron-Distal,intron-Proximal3.1003211.46637K562KHSRP
chr68632477086324832-CDS,intron-Distal3.3609415.12957K562ZRANB2
chr68632468586324877-CDS,intron-Distal,intron-Proximal3.0705420.08584K562UCHL5
chr68632499586325066-CDS,intron-Distal,intron-Proximal3.114309.38233K562ZNF622
chr68632366486323706-intron-Distal4.834486.94732K562KHSRP
chr68632068386320751-3'-UTR,intron-Distal3.251013.31157HepG2KHSRP
chr68632160186321642-3'-UTR,intron-Distal3.016934.87047K562FAM120A
chr68628780286287844-intron-Distal4.254323.55787K562PTBP1
chr68628803386288164-intron-Distal5.063245.72657HepG2MATR3
chr68632392986324016-3'-UTR,intron-Distal3.904917.22994K562KHSRP
chr68629076686290821-intron-Distal3.006986.36326HepG2SUGP2
chr68629099986291069-intron-Distal4.844806.73731K562EXOSC5
chr68629103786291146-intron-Distal3.986999.26703HepG2MATR3
chr68629171086291753-intron-Distal3.936303.29248HepG2SUGP2
chr68628643886286494-intron-Distal3.577195.32485HepG2SUGP2
chr68630344186303494-5'-UTR,intron-Distal4.9225613.16393HepG2DDX3X
chr68632222086322260-3'-UTR,intron-Distal3.716716.04577K562FAM120A
chr68632436486324391-3'-UTR,intron-Distal4.114785.35091K562PUM2
chr68630349586303574-5'-UTR,intron-Distal,intron-Proximal4.8490812.19987K562DDX3X
chr68632069986320734-3'-UTR,intron-Distal3.362876.79091K562PUM2
chr68632498986325061-CDS,intron-Distal,intron-Proximal3.0343810.73945HepG2BCLAF1
chr68629274186292807-intron-Distal3.275843.34940K562HNRNPM
chr68629103186291136-intron-Distal4.831406.75776K562MATR3
chr68629919786299292-5'-UTR,intron-Distal3.484203.40391K562XRCC6
chr68629355286293575-intron-Distal4.719036.08953K562EXOSC5
chr68632469186324698-CDS,intron-Distal,intron-Proximal3.401114.63311K562AQR
chr68627535386275428-intron-Distal4.149293.89294K562KHSRP
chr68629301986293074-intron-Distal4.067537.01277K562EXOSC5
chr68632250886322543-3'-UTR,intron-Distal,intron-Proximal3.662849.34382K562YBX3
chr68628645086286552-intron-Distal4.907277.08112HepG2MATR3
chr68629088886290903-intron-Distal4.003773.04224HepG2SUGP2
chr68628830186288353-intron-Distal3.806293.06015K562MATR3
chr68631961086319643-3'-UTR,intron-Distal4.783765.84761K562FAM120A
chr68632075186320817-3'-UTR,intron-Distal3.902565.34065HepG2KHSRP
chr68631954086319579-3'-UTR,intron-Distal3.502644.26772K562FAM120A
chr68631871186318769-3'-UTR,intron-Distal3.583775.65632K562UPF1
chr68632069486320810-3'-UTR,intron-Distal5.7439415.67094HepG2CSTF2
chr68629210886292176-intron-Distal4.504574.51299HepG2SUGP2
chr68631953186319570-3'-UTR,intron-Distal3.071613.57824K562UPF1
chr68632363686323664-intron-Distal3.450367.84449K562KHSRP
chr68627528786275353-intron-Distal5.065057.61259K562KHSRP
chr68630349486303546-5'-UTR,intron-Distal,intron-Proximal5.2631024.71130HepG2DDX3X
chr68632174586321793-3'-UTR,intron-Distal3.8911620.46341K562PUM2
chr68629105386291150-intron-Distal4.508645.02084HepG2HNRNPM
chr68632189986321928-3'-UTR,intron-Distal5.5283256.94332K562PUM2
chr68629104386291180-intron-Distal4.098754.02846K562HNRNPM
chr68630338086303441-5'-UTR,CDS,intron-Distal4.7024429.90724HepG2DDX3X
chr68632085986320880-3'-UTR,intron-Distal3.211664.61367K562UPF1
chr68628822686288254-intron-Distal4.006983.16028HepG2SUGP2
chr68629094086291051-intron-Distal5.7314312.35631HepG2SUGP2
chr68632497686325043-CDS,intron-Distal,intron-Proximal4.530867.37668K562FXR2
chr68628465586284782-intron-Distal4.519574.30178K562PTBP1
chr68632499886325063-CDS,intron-Distal,intron-Proximal3.3809611.56154K562UCHL5
chr68632192886322001-3'-UTR,intron-Distal5.36673400.00000K562PUM2
chr68632244386322515-3'-UTR,intron-Distal,intron-Proximal3.203634.24058K562GRWD1
chr68630355686303602-5'-UTR,intron-Distal,intron-Proximal4.243338.30191HepG2DDX3X
chr68632180786321880-3'-UTR,intron-Distal3.6130612.01639K562YBX3
chr68629900386299060-5'-UTR,intron-Distal3.574747.08935HepG2HLTF
chr68631809186318127-3'-UTR,intron-Distal3.805263.42844K562KHSRP
chr68629357886293602-intron-Distal4.875507.06230K562EXOSC5
chr68630330386303356-CDS,intron-Distal3.714369.39478HepG2DDX3X
chr68628653886286562-intron-Distal3.761063.04224HepG2SUGP2
chr68629920886299287-5'-UTR,intron-Distal4.065047.42137HepG2HLTF
chr68631958986319650-3'-UTR,intron-Distal3.078406.55259K562KHSRP
chr68629106986291141-intron-Distal4.904957.38693K562EXOSC5
chr68630340186303495-5'-UTR,CDS,intron-Distal5.6440717.47277K562DDX3X
chr68629210786292185-intron-Distal6.0338215.31952K562EXOSC5
chr68630025186300293-intron-Distal3.089503.07152HepG2HLTF
chr68632169886321745-3'-UTR,intron-Distal3.5029225.46782K562PUM2
chr68628944886289501-intron-Distal4.233484.53347HepG2SUGP2
chr68629231686292373-intron-Distal4.507023.89085K562EXOSC5
chr68630107186301209-intron-Distal4.5691911.37309K562KHSRP
chr68629363386293678-intron-Distal4.706985.44433K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-321N4.5 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-321N4.5 is not available on ENCORE database.

  • 14 RBPs can affect the levels of RP11-321N4.5.  








The Knockdown/knockout RNA-Seq assay for RP11-321N4.5 is not available on ENCORE database.





14 RBPs can affect the gene expression of RP11-321N4.5 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-321N4.5ENSG00000271793.11.5648014.04000-3.165502.889302.27080HepG2HNRNPU
RP11-321N4.5ENSG00000271793.11.6209012.50460-2.947602.197301.61170HepG2SAFB2
RP11-321N4.5ENSG00000271793.112.3376038.67540-1.648402.852601.60620K562ABCF1
RP11-321N4.5ENSG00000271793.116.6253052.07570-1.647204.013302.23450K562DDX19B
RP11-321N4.5ENSG00000271793.171.8128018.232201.977704.490303.74490K562FXR1
RP11-321N4.5ENSG00000271793.110.9553031.71240-1.533402.359301.31460K562GLRX3
RP11-321N4.5ENSG00000271793.110.0245039.18990-1.966904.228003.11420K562HNRNPU
RP11-321N4.5ENSG00000271793.119.1617046.91770-1.291902.873901.77350K562MAK16
RP11-321N4.5ENSG00000271793.112.3006038.48650-1.645602.373401.57050K562NAA15
RP11-321N4.5ENSG00000271793.1117.8979016.807002.810308.303605.05560K562PPIL4
RP11-321N4.5ENSG00000271793.147.1831021.133701.158602.471801.83830K562PTBP1
RP11-321N4.5ENSG00000271793.119.2883045.80430-1.247801.886701.42190K562PUS1
RP11-321N4.5ENSG00000271793.118.6832044.62760-1.256202.246601.70280K562RBM15
RP11-321N4.5ENSG00000271793.136.216404.824802.908004.549502.71330K562SFPQ
RP11-321N4.5ENSG00000271793.15.7794046.43860-3.006305.757803.70140K562UTP18
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-321N4.5 is not available on ENCORE database.





1 RBPs can affect the splicing of RP11-321N4.5 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSRP11-321N4.5ENSG00000271793.1chr6-863225498632264186322549863226388632469886324952-0.074000.002020.01299shorterK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RP11-321N4.5 is not avaliable on ENCORE database.