PTPRF

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PTPRF	ENSG00000142949.16	0.06	0.20	0.13	ENCSR000AEF
HepG2	PTPRF	ENSG00000142949.16	143.18	92.11	117.65	ENCSR985KAT
K562	PTPRF	ENSG00000142949.16	0.79	0.91	0.85	ENCSR000AEO

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PTPRF is not avaliable on ENCORE database.

Proteins bound to RNA

PTPRF RNA is bound by 53 proteins.

eCLIP assay for PTPRF is not avaliable on ENCORE database.

53 proteins are bound to PTPRF RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	44088984	44089058	+	3'-UTR	4.00587	3.86978	K562	YBX3
chr1	44088129	44088177	+	3'-UTR	3.91832	27.19316	HepG2	UPF1
chr1	44089085	44089159	+	3'-UTR	3.66047	22.03756	HepG2	LARP4
chr1	44089201	44089253	+	3'-UTR	3.39229	8.80363	HepG2	LARP4
chr1	44089104	44089133	+	3'-UTR	3.01190	11.99615	HepG2	DDX55
chr1	44088763	44088806	+	3'-UTR	3.26997	6.66452	HepG2	LIN28B
chr1	44089011	44089074	+	3'-UTR	4.07782	20.77801	HepG2	UPF1
chr1	44088129	44088212	+	3'-UTR	4.36409	4.22051	K562	UPF1
chr1	44089086	44089145	+	3'-UTR	3.17948	13.85502	HepG2	AKAP1
chr1	44088834	44088852	+	3'-UTR	4.33423	9.59063	HepG2	UPF1
chr1	44088588	44088681	+	3'-UTR	5.02475	16.34919	HepG2	AKAP1
chr1	44088210	44088262	+	3'-UTR	5.17785	28.82117	HepG2	UPF1
chr1	44088761	44088814	+	3'-UTR	5.30978	16.16225	HepG2	GRSF1
chr1	44088624	44088675	+	3'-UTR	4.55261	3.52163	HepG2	IGF2BP1
chr1	44088718	44088810	+	3'-UTR	4.73711	20.11143	HepG2	AKAP1
chr1	44088127	44088175	+	3'-UTR	3.21878	14.34538	HepG2	AKAP1
chr1	44088636	44088661	+	3'-UTR	4.38868	4.42709	HepG2	G3BP1
chr1	44088690	44088763	+	3'-UTR	5.68954	57.77697	HepG2	LIN28B
chr1	44089085	44089164	+	3'-UTR	4.25289	4.07810	K562	UPF1
chr1	44088810	44088858	+	3'-UTR	5.15705	8.34384	HepG2	AKAP1
chr1	44088145	44088175	+	3'-UTR	3.21230	9.26824	HepG2	TIAL1
chr1	44088175	44088232	+	3'-UTR	3.14956	11.59870	HepG2	AKAP1
chr1	44087823	44087926	+	3'-UTR	3.73305	8.96366	HepG2	AKAP1
chr1	44089159	44089190	+	3'-UTR	4.39851	6.54171	HepG2	DDX55
chr1	44088177	44088210	+	3'-UTR	4.23625	31.42486	HepG2	UPF1
chr1	44089074	44089156	+	3'-UTR	4.73490	32.23752	HepG2	UPF1
chr1	44088915	44088985	+	3'-UTR	4.04095	7.46175	HepG2	IGF2BP1
chr1	44088757	44088834	+	3'-UTR	6.11254	58.30333	HepG2	UPF1
chr1	44087957	44087996	+	3'-UTR	4.78204	6.92572	HepG2	AKAP1
chr1	44088566	44088700	+	3'-UTR	6.44307	67.38516	HepG2	UPF1
chr1	44089090	44089166	+	3'-UTR	3.13759	15.52067	HepG2	DDX6
chr1	44088708	44088757	+	3'-UTR	7.07556	36.44815	HepG2	UPF1
chr1	44087838	44087917	+	3'-UTR	5.71917	28.88615	HepG2	UPF1
chr1	44089013	44089067	+	3'-UTR	3.36296	10.16270	HepG2	IGF2BP1
chr1	44088711	44088761	+	3'-UTR	4.19452	17.10430	HepG2	GRSF1
chr1	44087678	44087822	+	3'-UTR	3.07869	11.13070	HepG2	IGF2BP1
chr1	44089133	44089138	+	3'-UTR	4.08190	17.03176	HepG2	DDX55
chr1	44088367	44088396	+	3'-UTR	5.36013	10.05440	HepG2	UPF1
chr1	44010701	44010766	+	5'-UTR,CDS,intron-Proximal	3.31196	6.57251	HepG2	ZNF800
chr1	44003867	44003905	+	5'-UTR,intron-Proximal	3.92924	7.81689	HepG2	NOL12
chr1	44003867	44003913	+	5'-UTR,intron-Proximal	3.27378	23.72811	HepG2	PPIG
chr1	43996556	43996645	+	5'-UTR,intron-Distal	4.87988	400.00000	HepG2	DDX3X
chr1	44010701	44010779	+	5'-UTR,CDS,intron-Proximal	4.03547	59.34529	HepG2	DDX3X
chr1	44003913	44003949	+	5'-UTR,intron-Proximal	4.47324	17.42797	HepG2	PPIG
chr1	44003867	44003942	+	5'-UTR,intron-Proximal	3.41524	7.21761	HepG2	ZNF800
chr1	43996645	43996711	+	5'-UTR,intron-Distal	4.22431	74.23701	HepG2	DDX3X
chr1	43996561	43996660	+	5'-UTR,intron-Distal	3.11414	12.80849	HepG2	RPS3
chr1	43996723	43996764	+	5'-UTR,intron-Distal,intron-Proximal	3.02109	7.23818	HepG2	NOL12
chr1	44003867	44003944	+	5'-UTR,intron-Proximal	4.42040	41.39602	HepG2	DDX3X
chr1	43996711	43996764	+	5'-UTR,intron-Distal,intron-Proximal	4.01442	52.15328	HepG2	DDX3X
chr1	43996673	43996762	+	5'-UTR,intron-Distal,intron-Proximal	3.77444	6.25732	K562	DDX24
chr1	44003861	44003985	+	5'-UTR,intron-Proximal	3.10649	5.54603	HepG2	AQR
chr1	44003868	44003921	+	5'-UTR,intron-Proximal	3.89907	7.61854	HepG2	RPS3
chr1	43996698	43996762	+	5'-UTR,intron-Distal,intron-Proximal	3.45688	15.09907	HepG2	SDAD1
chr1	44010708	44010759	+	5'-UTR,CDS	3.37959	6.84857	HepG2	SDAD1
chr1	44057050	44057134	+	5'-UTR,CDS	3.87270	3.65750	K562	YBX3
chr1	44071921	44071973	+	CDS	3.01618	6.49286	HepG2	PPIG
chr1	44085454	44085526	+	CDS	3.37576	10.48748	HepG2	LIN28B
chr1	44035420	44035489	+	CDS,intron-Proximal	3.25626	7.22857	HepG2	PRPF8
chr1	44071108	44071198	+	CDS,intron-Proximal	4.13099	14.13124	HepG2	PRPF8
chr1	44071148	44071205	+	CDS,intron-Proximal	4.51200	8.50130	HepG2	BUD13
chr1	44072067	44072124	+	CDS	3.03903	12.39964	HepG2	YBX3
chr1	44056973	44057037	+	CDS	3.36778	3.41356	HepG2	SND1
chr1	44035403	44035441	+	CDS	3.13776	6.47139	HepG2	PPIG
chr1	44086217	44086251	+	CDS,intron-Proximal	4.79805	7.26658	HepG2	LIN28B
chr1	44086123	44086164	+	CDS,intron-Proximal	3.09322	4.36051	HepG2	LIN28B
chr1	44063723	44063762	+	CDS,intron-Distal,intron-Proximal	4.21504	3.59236	HepG2	AQR
chr1	44086508	44086526	+	CDS,intron-Proximal	4.53390	6.04125	HepG2	LIN28B
chr1	44072025	44072044	+	CDS	3.52679	8.37146	HepG2	YBX3
chr1	44085781	44085827	+	CDS	5.35758	21.35848	HepG2	LIN28B
chr1	44019259	44019307	+	CDS	3.39607	10.41365	HepG2	PPIG
chr1	44070863	44070902	+	CDS	3.22967	3.27746	HepG2	LIN28B
chr1	44058269	44058324	+	CDS,intron-Proximal	3.11579	3.60559	HepG2	AQR
chr1	44044486	44044518	+	CDS	3.44326	6.27819	HepG2	PPIG
chr1	44010803	44010838	+	CDS,intron-Proximal	3.02850	5.79815	HepG2	LIN28B
chr1	44083580	44083629	+	CDS,intron-Proximal	5.29256	6.75320	K562	AQR
chr1	44035340	44035360	+	CDS	3.99766	6.36347	HepG2	PPIG
chr1	44069686	44069704	+	CDS,intron-Distal	4.36453	12.18798	HepG2	YBX3
chr1	44084242	44084352	+	CDS,intron-Proximal	4.96454	5.17615	K562	AQR
chr1	44072117	44072178	+	CDS,intron-Proximal	3.25654	11.69650	HepG2	PRPF8
chr1	44086124	44086133	+	CDS,intron-Proximal	3.99972	6.06308	HepG2	PPIG
chr1	44058248	44058357	+	CDS,intron-Proximal	3.63800	29.07779	HepG2	PRPF8
chr1	44072538	44072568	+	CDS	3.18376	8.15936	HepG2	YBX3
chr1	44019191	44019242	+	CDS	3.21951	14.87199	HepG2	DDX3X
chr1	44035286	44035340	+	CDS	3.48672	11.98226	HepG2	PPIG
chr1	44086643	44086662	+	CDS	3.39149	4.00430	HepG2	UPF1
chr1	44072631	44072639	+	CDS	3.89474	11.62487	HepG2	YBX3
chr1	44078422	44078479	+	CDS,intron-Distal,intron-Proximal	3.53329	10.79618	HepG2	U2AF2
chr1	44054399	44054472	+	CDS,intron-Proximal	3.17423	11.89709	HepG2	SDAD1
chr1	44086767	44086824	+	CDS,intron-Proximal	3.39116	6.73622	HepG2	RPS3
chr1	44019587	44019653	+	CDS,intron-Proximal	3.96482	20.01050	HepG2	PRPF8
chr1	44069706	44069726	+	CDS,intron-Distal	3.83915	7.67998	HepG2	YBX3
chr1	44072044	44072067	+	CDS	4.33955	11.22206	HepG2	YBX3
chr1	44085783	44085887	+	CDS	3.97409	3.43253	K562	YBX3
chr1	44056741	44056782	+	CDS	4.26174	3.70369	HepG2	LIN28B
chr1	44063721	44063800	+	CDS,intron-Distal,intron-Proximal	4.68137	4.48002	K562	AQR
chr1	44064301	44064420	+	CDS,intron-Proximal	3.27172	8.59638	HepG2	SF3A3
chr1	44086179	44086217	+	CDS	3.93821	7.16686	HepG2	LIN28B
chr1	44086509	44086519	+	CDS	3.18946	6.30629	HepG2	YBX3
chr1	44079382	44079431	+	CDS,intron-Proximal	3.98504	9.08333	HepG2	PRPF8
chr1	44085845	44085887	+	CDS	3.18715	5.32338	HepG2	LIN28B
chr1	44054447	44054467	+	CDS	3.00882	7.69750	HepG2	YBX3
chr1	44083579	44083632	+	CDS,intron-Proximal	5.14671	17.17028	HepG2	PRPF8
chr1	44070655	44070709	+	CDS,intron-Proximal	4.20068	11.41273	HepG2	PRPF8
chr1	44086768	44086784	+	CDS	3.26753	3.20756	HepG2	UPF1
chr1	44054666	44054687	+	CDS,intron-Proximal	4.28800	10.26986	HepG2	PRPF8
chr1	44010787	44010835	+	CDS	4.12657	14.79434	HepG2	PPIG
chr1	44010779	44010835	+	CDS	4.52424	34.42102	HepG2	DDX3X
chr1	44069376	44069422	+	CDS,intron-Distal	3.90992	5.36918	HepG2	ZNF800
chr1	44069738	44069849	+	CDS,intron-Distal	3.77094	4.37861	HepG2	IGF2BP3
chr1	44054328	44054410	+	CDS,intron-Proximal	3.48054	6.71512	HepG2	SF3B4
chr1	44069439	44069509	+	CDS,intron-Distal	3.45136	6.56191	HepG2	IGF2BP1
chr1	44019162	44019176	+	CDS,intron-Proximal	3.98092	3.47103	HepG2	LIN28B
chr1	44019939	44020009	+	intron-Distal	5.48740	10.04692	HepG2	HNRNPM
chr1	44078734	44078798	+	intron-Distal	3.65041	8.51568	HepG2	PCBP2
chr1	44058884	44058965	+	intron-Distal	4.89096	6.00625	K562	EIF4G2
chr1	44024340	44024372	+	intron-Distal	3.37899	4.14880	HepG2	CSTF2T
chr1	44031355	44031410	+	intron-Distal	4.59542	4.19473	HepG2	FKBP4
chr1	44025884	44025941	+	intron-Distal	4.20225	11.71249	HepG2	DKC1
chr1	44018639	44018717	+	intron-Distal	4.35896	3.99130	HepG2	FAM120A
chr1	44011057	44011090	+	intron-Distal	3.16608	3.69530	HepG2	CSTF2T
chr1	44026218	44026277	+	intron-Distal	4.69674	6.03756	HepG2	FAM120A
chr1	44062490	44062555	+	intron-Distal	4.48141	3.60944	K562	TARDBP
chr1	44049896	44049937	+	intron-Distal	3.03080	4.59729	HepG2	RBFOX2
chr1	44029383	44029423	+	intron-Distal	3.52658	3.46580	HepG2	CSTF2T
chr1	44075184	44075270	+	intron-Distal,intron-Proximal	4.59875	13.33125	HepG2	RBM22
chr1	44062767	44062987	+	intron-Distal	6.11069	13.16698	K562	TARDBP
chr1	44026281	44026336	+	intron-Distal	5.55132	9.35257	HepG2	CSTF2T
chr1	44048810	44048890	+	intron-Distal,intron-Proximal	5.23778	24.01246	HepG2	RBFOX2
chr1	44025294	44025351	+	intron-Distal	4.08056	3.97974	HepG2	RBFOX2
chr1	44053166	44053180	+	intron-Distal	4.62712	5.57311	HepG2	RBFOX2
chr1	44029594	44029704	+	intron-Distal	3.16208	8.77348	HepG2	FAM120A
chr1	44052822	44052876	+	intron-Distal	3.20368	8.94889	HepG2	RBFOX2
chr1	44031420	44031461	+	intron-Distal	4.82752	15.08124	HepG2	CSTF2T
chr1	44026129	44026218	+	intron-Distal	3.07505	7.02731	HepG2	FAM120A
chr1	44025854	44025895	+	intron-Distal	4.62068	4.67055	K562	EIF4G2
chr1	44058865	44058933	+	intron-Distal	3.07153	3.41658	HepG2	SRSF7
chr1	44010897	44010961	+	intron-Distal,intron-Proximal	3.42409	3.23466	HepG2	CSTF2T
chr1	44049005	44049059	+	intron-Distal	6.62869	55.66406	HepG2	RBFOX2
chr1	44053147	44053199	+	intron-Distal	4.12716	4.28420	HepG2	HNRNPM
chr1	44015731	44015795	+	intron-Distal	3.35862	6.51348	HepG2	CSTF2T
chr1	44079515	44079571	+	intron-Distal	4.32688	5.98353	HepG2	EFTUD2
chr1	44026129	44026187	+	intron-Distal	3.08874	7.31530	HepG2	CSTF2T
chr1	44053382	44053481	+	intron-Distal	3.80489	4.91022	HepG2	DDX6
chr1	44053207	44053251	+	intron-Distal	5.70368	13.71529	HepG2	RBFOX2
chr1	44029592	44029630	+	intron-Distal	3.75400	8.38969	HepG2	CSTF2T
chr1	44025245	44025334	+	intron-Distal	4.94630	8.25864	HepG2	IGF2BP1
chr1	44049064	44049126	+	intron-Distal	3.21605	3.11910	K562	RBFOX2
chr1	44001817	44001900	+	intron-Distal	5.12716	7.23521	HepG2	HNRNPM
chr1	44029840	44029847	+	intron-Distal	4.15151	3.87340	HepG2	CSTF2T
chr1	44031367	44031406	+	intron-Distal	4.10185	11.90626	HepG2	CSTF2T
chr1	44026122	44026198	+	intron-Distal	4.84096	3.59041	K562	DROSHA
chr1	44023815	44023870	+	intron-Distal	3.32709	5.40194	HepG2	FAM120A
chr1	44032188	44032233	+	intron-Distal	3.09540	4.88713	HepG2	CSTF2T
chr1	44059183	44059239	+	intron-Distal	4.13406	3.98448	HepG2	IGF2BP1
chr1	44029622	44029701	+	intron-Distal	3.18275	3.64049	HepG2	XRN2
chr1	44031462	44031523	+	intron-Distal	4.54680	9.42435	HepG2	FAM120A
chr1	44029878	44029935	+	intron-Distal	3.35646	9.77547	HepG2	CSTF2T
chr1	44002419	44002516	+	intron-Distal	3.72038	4.25134	HepG2	RBFOX2
chr1	44066377	44066428	+	intron-Distal	5.06367	7.38423	HepG2	PCBP2
chr1	44026104	44026202	+	intron-Distal	3.21355	4.23685	HepG2	CDC40
chr1	44012069	44012138	+	intron-Distal	4.35902	8.91945	HepG2	CSTF2T
chr1	44049113	44049169	+	intron-Distal	5.02107	24.01246	HepG2	RBFOX2
chr1	44053073	44053126	+	intron-Distal	3.11267	5.28375	HepG2	HNRNPM
chr1	44063161	44063289	+	intron-Distal	3.99792	15.11004	HepG2	DKC1
chr1	44078611	44078715	+	intron-Distal	6.49566	33.84777	HepG2	PCBP2
chr1	44049110	44049161	+	intron-Distal	4.28019	4.03786	HepG2	NKRF
chr1	44048957	44049115	+	intron-Distal	6.90477	18.53411	K562	DROSHA
chr1	44061529	44061599	+	intron-Distal	4.03341	3.48722	HepG2	PRPF4
chr1	44071755	44071860	+	intron-Distal,intron-Proximal	4.91437	6.67793	HepG2	EFTUD2
chr1	44025016	44025062	+	intron-Distal	4.03773	3.98448	HepG2	IGF2BP1
chr1	44053864	44053910	+	intron-Distal	3.13258	3.57996	HepG2	XPO5
chr1	44049007	44049064	+	intron-Distal	4.51400	5.46259	K562	RBFOX2
chr1	44030541	44030585	+	intron-Distal	3.65640	5.59719	HepG2	CSTF2T
chr1	44053369	44053418	+	intron-Distal	4.64688	5.85494	HepG2	DROSHA
chr1	44053515	44053622	+	intron-Distal	5.95868	69.95290	HepG2	RBFOX2
chr1	44048944	44048991	+	intron-Distal	5.73871	56.01162	HepG2	RBFOX2
chr1	44024013	44024051	+	intron-Distal	4.56285	4.86859	HepG2	CSTF2T
chr1	44063109	44063152	+	intron-Distal	4.74118	5.17678	K562	EIF4G2
chr1	44026131	44026236	+	intron-Distal	3.99390	7.03156	HepG2	NKRF
chr1	44062499	44062539	+	intron-Distal	4.49847	3.54185	K562	EIF4G2
chr1	44026596	44026673	+	intron-Distal	4.28031	5.09344	HepG2	XPO5
chr1	44031179	44031250	+	intron-Distal	4.01868	11.40074	HepG2	CSTF2T
chr1	44023807	44023854	+	intron-Distal	4.07181	6.73995	HepG2	CSTF2T
chr1	44046123	44046210	+	intron-Distal	3.10245	3.45174	HepG2	NKRF
chr1	44053703	44053796	+	intron-Distal	4.43864	11.12527	HepG2	HNRNPK
chr1	44053251	44053337	+	intron-Distal	6.26194	55.92497	HepG2	RBFOX2
chr1	44025695	44025741	+	intron-Distal	5.01594	11.29390	HepG2	DKC1
chr1	44053418	44053605	+	intron-Distal	4.19316	15.99038	HepG2	DROSHA
chr1	44024837	44024886	+	intron-Distal	5.12153	7.70656	HepG2	DKC1
chr1	44053791	44053836	+	intron-Distal	4.21413	3.59983	HepG2	DROSHA
chr1	44053256	44053322	+	intron-Distal	3.34121	8.44177	HepG2	HNRNPM
chr1	44019835	44019957	+	intron-Distal	3.73883	5.10890	HepG2	SFPQ
chr1	44031386	44031462	+	intron-Distal	3.51523	7.47109	HepG2	FAM120A
chr1	44067642	44067688	+	intron-Distal,intron-Proximal	4.04262	4.07750	HepG2	HNRNPK
chr1	44031410	44031520	+	intron-Distal	5.48587	7.02466	HepG2	FKBP4
chr1	44066464	44066531	+	intron-Distal	3.39262	9.50194	HepG2	PCBP2
chr1	44058296	44058383	+	intron-Distal,intron-Proximal	3.14474	6.44186	HepG2	RBM22
chr1	44025895	44025940	+	intron-Distal	4.94073	6.00625	K562	EIF4G2
chr1	44085654	44085722	+	intron-Distal,intron-Proximal	5.93590	10.20211	HepG2	EFTUD2
chr1	44031461	44031524	+	intron-Distal	4.03861	16.73018	HepG2	CSTF2T
chr1	44045060	44045168	+	intron-Distal	5.75274	10.30844	HepG2	XPO5
chr1	44059069	44059155	+	intron-Distal	3.27470	3.56709	HepG2	IGF2BP1
chr1	44050179	44050251	+	intron-Distal	3.24913	5.66557	HepG2	HNRNPK
chr1	44053494	44053590	+	intron-Distal	4.81151	6.99499	K562	DROSHA
chr1	44061905	44061992	+	intron-Distal	3.69744	3.16983	HepG2	FUS
chr1	44049169	44049202	+	intron-Distal	3.81303	8.69108	HepG2	RBFOX2
chr1	44029610	44029695	+	intron-Distal	3.17718	3.40641	HepG2	GTF2F1
chr1	44045126	44045222	+	intron-Distal	3.38102	4.01088	HepG2	RBFOX2
chr1	44045883	44045928	+	intron-Distal	3.25108	3.23179	HepG2	RBFOX2
chr1	44053514	44053578	+	intron-Distal	3.65702	5.38546	K562	RBFOX2
chr1	44062025	44062077	+	intron-Distal	3.96268	3.63122	HepG2	PRPF4
chr1	44078600	44078708	+	intron-Distal	3.03632	5.25203	HepG2	HNRNPK
chr1	44053050	44053117	+	intron-Distal	3.82416	5.80201	HepG2	DROSHA
chr1	44049059	44049109	+	intron-Distal	6.12771	35.62791	HepG2	RBFOX2
chr1	44061928	44061988	+	intron-Distal	3.09008	3.04847	HepG2	CSTF2T
chr1	44061544	44061608	+	intron-Distal	3.78597	3.21433	HepG2	TAF15
chr1	44066522	44066597	+	intron-Distal	5.10066	3.96879	HepG2	MATR3
chr1	44054230	44054273	+	intron-Distal	4.01146	9.46305	HepG2	RBFOX2
chr1	44026106	44026186	+	intron-Distal	3.26327	7.22920	HepG2	IGF2BP1
chr1	44053199	44053256	+	intron-Distal	4.58397	22.32273	HepG2	HNRNPM
chr1	44029630	44029706	+	intron-Distal	3.72540	15.64296	HepG2	CSTF2T
chr1	44026494	44026585	+	intron-Distal	4.47754	14.17211	HepG2	CSTF2T
chr1	44063183	44063267	+	intron-Distal	4.39762	5.23365	HepG2	TIAL1
chr1	44031672	44031747	+	intron-Distal	3.61373	9.63192	HepG2	CSTF2T
chr1	44048590	44048638	+	intron-Distal	3.10886	6.41736	HepG2	RBFOX2
chr1	44015593	44015656	+	intron-Distal	4.61952	4.61649	HepG2	CSTF2T
chr1	44052926	44052989	+	intron-Distal	3.63273	13.08512	HepG2	RBFOX2
chr1	44030323	44030342	+	intron-Distal	3.67859	5.56645	HepG2	CSTF2T
chr1	44026224	44026281	+	intron-Distal	4.70754	11.88189	HepG2	CSTF2T
chr1	44044957	44045028	+	intron-Distal	4.21208	3.45219	HepG2	RBFOX2
chr1	44037300	44037381	+	intron-Distal	3.81603	3.06084	HepG2	HNRNPK
chr1	44036934	44037051	+	intron-Distal	3.45254	4.59945	HepG2	HNRNPK
chr1	44053662	44053681	+	intron-Distal	4.93078	6.92529	HepG2	RBFOX2
chr1	44031398	44031462	+	intron-Distal	3.24000	5.61911	HepG2	NKRF
chr1	44024131	44024167	+	intron-Distal	3.61631	6.73713	HepG2	CSTF2T
chr1	44078555	44078611	+	intron-Distal,intron-Proximal	5.45697	16.92837	HepG2	PCBP2
chr1	44024474	44024512	+	intron-Distal	4.75637	6.58550	HepG2	CSTF2T
chr1	44049989	44050030	+	intron-Distal	3.56024	4.75223	HepG2	RBFOX2
chr1	44026446	44026564	+	intron-Distal	3.47355	3.59783	HepG2	HNRNPK
chr1	44034700	44034760	+	intron-Distal	3.86726	4.14880	HepG2	CSTF2T
chr1	44013813	44013862	+	intron-Distal	4.91818	7.35173	HepG2	CSTF2T
chr1	44032341	44032404	+	intron-Distal	3.07250	4.36453	HepG2	CSTF2T
chr1	44049117	44049208	+	intron-Distal	3.89945	10.37735	HepG2	DROSHA
chr1	44024857	44024884	+	intron-Distal	3.61502	4.14880	HepG2	CSTF2T
chr1	44053265	44053336	+	intron-Distal	4.15140	3.53160	K562	RBFOX2
chr1	44029878	44029929	+	intron-Distal	3.97443	6.00449	HepG2	FAM120A
chr1	44066414	44066524	+	intron-Distal	3.37172	9.61298	HepG2	PTBP1
chr1	44014006	44014055	+	intron-Distal	4.28703	4.28089	HepG2	FAM120A
chr1	44053511	44053549	+	intron-Distal	5.41386	5.63232	HepG2	DDX6
chr1	44048890	44048944	+	intron-Distal	4.76051	23.61393	HepG2	RBFOX2
chr1	44015087	44015168	+	intron-Distal	3.70937	8.04077	HepG2	CSTF2T
chr1	44018651	44018705	+	intron-Distal	3.16608	3.69530	HepG2	CSTF2T
chr1	44029294	44029326	+	intron-Distal	3.24448	5.12571	HepG2	CSTF2T
chr1	44049001	44049086	+	intron-Distal	5.12259	11.66301	HepG2	DDX6
chr1	44041638	44041759	+	intron-Distal,intron-Proximal	3.95697	7.30362	HepG2	HNRNPK
chr1	44013194	44013238	+	intron-Distal	3.39579	3.92299	HepG2	CSTF2T
chr1	44030361	44030412	+	intron-Distal	3.28270	6.99714	HepG2	CSTF2T
chr1	44058528	44058599	+	intron-Distal	3.26148	3.70770	HepG2	DDX59
chr1	44063103	44063162	+	intron-Distal	3.17424	3.61668	HepG2	IGF2BP1
chr1	44053348	44053411	+	intron-Distal	5.36869	27.04247	HepG2	RBFOX2
chr1	44067478	44067538	+	intron-Distal	3.30303	3.59783	HepG2	HNRNPK
chr1	44023797	44023888	+	intron-Distal	4.51941	5.35385	HepG2	PRPF4
chr1	44058889	44058971	+	intron-Distal	4.88323	9.32999	HepG2	DKC1
chr1	44066524	44066602	+	intron-Distal	4.31362	13.25395	HepG2	PTBP1
chr1	44058871	44058934	+	intron-Distal	4.27484	3.71028	HepG2	NKRF
chr1	44024828	44024888	+	intron-Distal	4.36878	3.88645	HepG2	FUS
chr1	44018514	44018574	+	intron-Distal	4.33279	5.11753	HepG2	CSTF2T
chr1	44063191	44063281	+	intron-Distal	5.75686	10.98400	K562	EIF4G2
chr1	43997739	43997857	+	intron-Distal	3.65205	5.19856	HepG2	PTBP1
chr1	44013538	44013601	+	intron-Distal	3.17177	5.66356	HepG2	CSTF2T
chr1	44066535	44066590	+	intron-Distal	4.02526	7.33240	HepG2	PCBP2
chr1	44014008	44014052	+	intron-Distal	3.84976	6.36044	HepG2	CSTF2T
chr1	44048947	44049117	+	intron-Distal	6.03325	28.47326	HepG2	DROSHA
chr1	44026106	44026208	+	intron-Distal	4.12612	17.16917	HepG2	DKC1
chr1	44032839	44032915	+	intron-Distal	5.03924	6.32277	HepG2	CSTF2T
chr1	44053714	44053769	+	intron-Distal	4.53267	10.75447	HepG2	RBFOX2
chr1	44066619	44066650	+	intron-Distal	3.32232	3.00914	HepG2	PTBP1
chr1	44026125	44026186	+	intron-Distal	4.51084	8.03551	K562	EIF4G2
chr1	44078558	44078645	+	intron-Distal,intron-Proximal	5.54901	7.45191	HepG2	PTBP1
chr1	44024167	44024244	+	intron-Distal	4.05355	9.33519	HepG2	CSTF2T
chr1	44059181	44059247	+	intron-Distal	3.17106	3.15160	HepG2	STAU2
chr1	44024416	44024474	+	intron-Distal	5.60984	12.62224	HepG2	CSTF2T
chr1	44023425	44023503	+	intron-Distal	4.66004	10.62681	HepG2	CSTF2T
chr1	44053006	44053046	+	intron-Distal	3.11892	5.77148	HepG2	HNRNPM
chr1	44054687	44054714	+	intron-Proximal	4.77551	10.42975	HepG2	PRPF8
chr1	44071330	44071379	+	intron-Proximal	3.83968	4.86737	HepG2	RBM22
chr1	44085671	44085755	+	intron-Proximal	4.63273	4.28193	HepG2	AQR
chr1	44069015	44069076	+	intron-Proximal	5.27189	7.19196	HepG2	SF3B4
chr1	44057619	44057661	+	intron-Proximal	3.87823	5.61068	HepG2	PRPF8
chr1	44072420	44072474	+	intron-Proximal	3.55854	6.24865	HepG2	SF3B4
chr1	44069029	44069083	+	intron-Proximal	4.90294	9.84788	HepG2	SF3A3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for PTPRF is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PTPRF is not available on ENCORE database.
121 RBPs can affect the levels of PTPRF.

The Knockdown/knockout RNA-Seq assay for PTPRF is not available on ENCORE database.

121 RBPs can affect the gene expression of PTPRF :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PTPRF	ENSG00000142949.12	6843.70600	5064.41620	0.43430	3.89440	2.73550	HepG2	ADAR
PTPRF	ENSG00000142949.12	6115.50210	14336.19900	-1.22910	14.42400	13.30820	HepG2	AKAP1
PTPRF	ENSG00000142949.12	7311.14880	9480.00880	-0.37480	11.02100	9.87320	HepG2	CKAP4
PTPRF	ENSG00000142949.12	4015.37290	9466.21360	-1.23730	4.77350	3.76270	HepG2	CNOT7
PTPRF	ENSG00000142949.12	7171.63140	4157.84990	0.78640	12.55680	11.21070	HepG2	CPSF6
PTPRF	ENSG00000142949.12	10236.24580	7208.28260	0.50590	6.04870	5.16840	HepG2	CELF1
PTPRF	ENSG00000142949.12	9603.87770	7750.63500	0.30920	4.79190	3.85650	HepG2	DAZAP1
PTPRF	ENSG00000142949.12	8972.07910	13731.30420	-0.61400	5.25510	4.41630	HepG2	DDX3X
PTPRF	ENSG00000142949.12	14612.40680	11799.45370	0.30840	2.12050	1.57250	HepG2	DDX6
PTPRF	ENSG00000142949.12	6381.65340	5099.48410	0.32350	4.69290	3.79800	HepG2	DNAJC21
PTPRF	ENSG00000142949.12	5737.20550	5054.76890	0.18260	3.16550	2.47570	HepG2	DNAJC2
PTPRF	ENSG00000142949.12	5100.18500	6341.52140	-0.31430	2.73620	1.63340	HepG2	EFTUD2
PTPRF	ENSG00000142949.12	6968.59660	11339.15160	-0.70240	6.43850	5.55510	HepG2	EIF2S1
PTPRF	ENSG00000142949.12	8606.15870	12529.18500	-0.54190	4.47020	3.66040	HepG2	EIF4A3
PTPRF	ENSG00000142949.12	11004.48350	7324.86160	0.58710	8.90690	7.47950	HepG2	EIF4G2
PTPRF	ENSG00000142949.12	11491.20270	12936.29640	-0.17090	2.73990	2.14160	HepG2	ETF1
PTPRF	ENSG00000142949.12	7898.99120	6022.71420	0.39120	2.63280	1.63980	HepG2	GNB2L1
PTPRF	ENSG00000142949.12	6809.64540	4712.80920	0.53090	5.53490	4.65080	HepG2	GPKOW
PTPRF	ENSG00000142949.12	7598.16190	5148.34200	0.56140	6.61140	5.67620	HepG2	HNRNPA1
PTPRF	ENSG00000142949.12	3874.05000	5726.68320	-0.56390	4.30100	3.45030	HepG2	HNRNPC
PTPRF	ENSG00000142949.12	8879.26830	6363.45680	0.48050	13.49420	12.06970	HepG2	HNRNPF
PTPRF	ENSG00000142949.12	8438.29570	7060.22360	0.25710	6.49980	5.50970	HepG2	HNRNPL
PTPRF	ENSG00000142949.12	6296.21210	4497.56020	0.48520	5.53970	4.68050	HepG2	HNRNPLL
PTPRF	ENSG00000142949.12	6417.62020	5688.81410	0.17380	2.42750	1.85660	HepG2	HNRNPU
PTPRF	ENSG00000142949.12	8168.70660	6266.16600	0.38240	5.57260	4.58270	HepG2	IGF2BP1
PTPRF	ENSG00000142949.12	6632.47640	5810.91740	0.19070	3.93250	3.07350	HepG2	ILF2
PTPRF	ENSG00000142949.12	10315.58430	8668.11610	0.25090	5.49640	4.07420	HepG2	KIF1C
PTPRF	ENSG00000142949.12	10074.15660	13272.00350	-0.39770	2.68240	1.45720	HepG2	KRR1
PTPRF	ENSG00000142949.12	15516.24850	11816.41190	0.39290	2.00780	1.30850	HepG2	LARP4
PTPRF	ENSG00000142949.12	6772.77580	12651.64470	-0.90150	8.18790	7.07080	HepG2	MAGOH
PTPRF	ENSG00000142949.12	4842.96840	6462.81130	-0.41630	2.40800	1.42460	HepG2	METAP2
PTPRF	ENSG00000142949.12	8843.04190	7008.74570	0.33530	3.05930	1.78310	HepG2	NAA15
PTPRF	ENSG00000142949.12	9940.64050	13020.41260	-0.38940	2.93870	2.28740	HepG2	NCBP2
PTPRF	ENSG00000142949.12	5402.38460	3927.82970	0.45980	2.85570	1.38160	HepG2	NOLC1
PTPRF	ENSG00000142949.12	5710.26310	3988.26500	0.51770	6.93640	5.78600	HepG2	NSUN2
PTPRF	ENSG00000142949.12	4258.92380	5630.82110	-0.40290	9.23450	7.83320	HepG2	PARN
PTPRF	ENSG00000142949.12	10062.24300	12587.95190	-0.32310	6.03820	5.19650	HepG2	PCBP1
PTPRF	ENSG00000142949.12	7280.11480	5073.94930	0.52080	5.13710	4.16130	HepG2	PPIL4
PTPRF	ENSG00000142949.12	6044.51360	6918.53980	-0.19480	2.54570	1.80090	HepG2	PRPF4
PTPRF	ENSG00000142949.12	8126.31450	12809.06690	-0.65650	16.31610	15.20060	HepG2	PTBP1
PTPRF	ENSG00000142949.12	10488.72400	7336.50790	0.51560	4.49820	3.75900	HepG2	PUF60
PTPRF	ENSG00000142949.12	6423.62480	7788.03910	-0.27790	7.46150	6.58490	HepG2	PUM1
PTPRF	ENSG00000142949.12	11139.48860	7782.34290	0.51730	10.89420	9.61350	HepG2	PUM2
PTPRF	ENSG00000142949.12	8370.36150	9659.04490	-0.20660	3.67330	2.98440	HepG2	PUS1
PTPRF	ENSG00000142949.12	11069.45870	13871.77890	-0.32560	5.23360	4.41510	HepG2	QKI
PTPRF	ENSG00000142949.12	4123.11770	6722.88640	-0.70530	2.69900	2.00200	HepG2	RAVER1
PTPRF	ENSG00000142949.12	4425.66030	10812.26740	-1.28870	76.19620	74.22810	HepG2	RBM22
PTPRF	ENSG00000142949.12	5013.85770	6009.40090	-0.26130	2.68710	2.08010	HepG2	RPS19
PTPRF	ENSG00000142949.12	7195.91220	5066.07890	0.50620	19.14540	17.67110	HepG2	SAFB2
PTPRF	ENSG00000142949.12	4384.98380	6030.65030	-0.45970	5.49650	4.18290	HepG2	SERBP1
PTPRF	ENSG00000142949.12	5886.34840	13335.25510	-1.17980	86.71550	84.30660	HepG2	SF3B4
PTPRF	ENSG00000142949.12	12768.65220	7034.59210	0.86000	65.47340	63.11550	HepG2	SLBP
PTPRF	ENSG00000142949.12	6773.83290	12211.91220	-0.85020	55.54470	54.04270	HepG2	SRFBP1
PTPRF	ENSG00000142949.12	7762.75570	13919.37920	-0.84250	52.32800	50.84290	HepG2	SRSF1
PTPRF	ENSG00000142949.12	10235.41200	7243.74730	0.49870	10.27630	9.17230	HepG2	SRSF5
PTPRF	ENSG00000142949.12	7178.82480	6251.96300	0.19930	2.74490	2.05100	HepG2	SRSF7
PTPRF	ENSG00000142949.12	10170.94050	11324.38030	-0.15500	2.16070	1.66070	HepG2	SRSF9
PTPRF	ENSG00000142949.12	10232.18790	8238.12390	0.31260	8.73690	7.73530	HepG2	SUCLG1
PTPRF	ENSG00000142949.12	9375.48520	6962.96110	0.42910	5.01130	3.76520	HepG2	SUPT6H
PTPRF	ENSG00000142949.12	9005.08830	12512.00200	-0.47450	6.20080	5.41850	HepG2	TAF15
PTPRF	ENSG00000142949.12	6941.97340	4384.88920	0.66270	11.04550	9.74130	HepG2	TARDBP
PTPRF	ENSG00000142949.12	6309.49320	5527.35340	0.19080	1.82130	1.39790	HepG2	TIAL1
PTPRF	ENSG00000142949.12	7701.82990	5577.18520	0.46560	13.88640	12.76010	HepG2	TRIM56
PTPRF	ENSG00000142949.12	10428.13260	7167.47710	0.54080	3.77190	2.73700	HepG2	TUFM
PTPRF	ENSG00000142949.12	4770.85800	8822.75850	-0.88700	8.26340	7.17870	HepG2	U2AF1
PTPRF	ENSG00000142949.12	11586.90210	7586.67470	0.61090	3.19870	2.29920	HepG2	UBE2L3
PTPRF	ENSG00000142949.12	4503.16020	6615.32220	-0.55490	2.65710	1.42710	HepG2	XRCC5
PTPRF	ENSG00000142949.12	12792.97790	10965.81250	0.22220	5.70760	4.99570	HepG2	ZNF622
PTPRF	ENSG00000142949.12	69.26600	125.85740	-0.86160	3.07380	1.82140	K562	AARS
PTPRF	ENSG00000142949.12	271.49270	135.00610	1.00780	4.03290	1.94420	K562	ADAR
PTPRF	ENSG00000142949.12	1072.30260	455.71250	1.23440	33.34310	31.45680	K562	AGGF1
PTPRF	ENSG00000142949.12	674.61890	500.80270	0.42970	3.38680	2.27500	K562	AKAP8
PTPRF	ENSG00000142949.12	457.73120	321.04370	0.51160	1.93770	1.43040	K562	AQR
PTPRF	ENSG00000142949.12	211.77940	138.18100	0.61590	2.41830	1.52260	K562	BCLAF1
PTPRF	ENSG00000142949.12	333.41330	544.56660	-0.70780	5.82210	4.08160	K562	CCDC124
PTPRF	ENSG00000142949.12	432.50680	281.53630	0.61930	3.70040	1.98940	K562	CKAP4
PTPRF	ENSG00000142949.12	918.60570	184.53960	2.31540	30.45910	27.27590	K562	CNOT7
PTPRF	ENSG00000142949.12	428.14230	271.09570	0.65920	5.37850	3.79670	K562	CPEB4
PTPRF	ENSG00000142949.12	255.58220	124.66310	1.03570	7.21820	5.94330	K562	CPSF6
PTPRF	ENSG00000142949.12	217.51740	104.83080	1.05300	6.72920	4.97830	K562	CSTF2
PTPRF	ENSG00000142949.12	685.76250	458.50180	0.58070	3.58600	2.47410	K562	CELF1
PTPRF	ENSG00000142949.12	546.33780	366.98160	0.57400	4.94380	3.29860	K562	DDX21
PTPRF	ENSG00000142949.12	474.20060	280.45720	0.75760	8.30720	7.25760	K562	DDX47
PTPRF	ENSG00000142949.12	269.82570	133.16820	1.01870	3.67760	1.71720	K562	DDX51
PTPRF	ENSG00000142949.12	266.23930	182.75830	0.54270	2.90780	1.55600	K562	DDX6
PTPRF	ENSG00000142949.12	130.53470	193.62090	-0.56880	2.54610	1.85070	K562	EIF2S2
PTPRF	ENSG00000142949.12	240.94770	134.47420	0.84130	3.28760	2.18270	K562	EIF3A
PTPRF	ENSG00000142949.12	212.78180	126.86640	0.74600	3.44030	2.48310	K562	FMR1
PTPRF	ENSG00000142949.12	235.26250	107.54140	1.12930	7.16590	5.62140	K562	FTO
PTPRF	ENSG00000142949.12	104.11740	195.85640	-0.91160	5.04560	4.26270	K562	FXR1
PTPRF	ENSG00000142949.12	28.72520	73.91700	-1.36360	3.82730	2.96550	K562	G3BP2
PTPRF	ENSG00000142949.12	389.67070	123.46720	1.65800	10.14410	7.41890	K562	GEMIN5
PTPRF	ENSG00000142949.12	409.02030	259.03930	0.65890	4.84940	3.35880	K562	GLRX3
PTPRF	ENSG00000142949.12	332.99920	119.01240	1.48430	7.76500	6.43120	K562	GPKOW
PTPRF	ENSG00000142949.12	936.88600	258.01590	1.86030	39.61580	36.67720	K562	GRSF1
PTPRF	ENSG00000142949.12	540.12000	204.12590	1.40370	21.63710	19.10710	K562	HNRNPA1
PTPRF	ENSG00000142949.12	202.67910	137.65600	0.55800	2.13410	1.60110	K562	HNRNPC
PTPRF	ENSG00000142949.12	68.33830	122.01970	-0.83630	2.72840	1.50620	K562	HNRNPK
PTPRF	ENSG00000142949.12	315.35690	226.05530	0.48020	2.77500	1.87960	K562	HNRNPU
PTPRF	ENSG00000142949.12	310.25150	168.52780	0.88040	3.82700	2.13260	K562	ILF2
PTPRF	ENSG00000142949.12	227.85530	128.15050	0.83020	5.06900	3.77560	K562	MATR3
PTPRF	ENSG00000142949.12	904.60080	563.72470	0.68220	8.94010	7.12290	K562	MBNL1
PTPRF	ENSG00000142949.12	235.35320	116.17370	1.01840	4.53610	3.39610	K562	METAP2
PTPRF	ENSG00000142949.12	930.75520	272.35760	1.77280	55.13370	52.44420	K562	MTPAP
PTPRF	ENSG00000142949.12	312.85660	188.04390	0.73430	5.08430	3.41240	K562	NCBP2
PTPRF	ENSG00000142949.12	362.39190	161.76100	1.16360	6.24830	3.18470	K562	NFX1
PTPRF	ENSG00000142949.12	732.86260	302.54870	1.27630	27.63070	25.67140	K562	NSUN2
PTPRF	ENSG00000142949.12	413.76590	250.75700	0.72240	2.63220	1.67180	K562	PABPN1
PTPRF	ENSG00000142949.12	869.42240	507.23920	0.77730	7.58720	6.21050	K562	PCBP3
PTPRF	ENSG00000142949.12	625.56970	389.08300	0.68500	6.88180	5.62640	K562	POLR2G
PTPRF	ENSG00000142949.12	231.09650	148.93100	0.63380	3.05200	2.18430	K562	PPIG
PTPRF	ENSG00000142949.12	232.45110	123.43010	0.91310	5.48210	4.14770	K562	PSIP1
PTPRF	ENSG00000142949.12	79.19300	124.78120	-0.65600	2.32720	1.71150	K562	PTBP1
PTPRF	ENSG00000142949.12	628.79890	423.86760	0.56890	4.79230	3.51790	K562	PUM2
PTPRF	ENSG00000142949.12	266.30530	470.20000	-0.82020	3.05800	2.49160	K562	PUS1
PTPRF	ENSG00000142949.12	598.61770	458.20250	0.38550	2.93730	2.32920	K562	RBM15
PTPRF	ENSG00000142949.12	328.57420	121.98630	1.42940	10.73990	9.10210	K562	RPS19
PTPRF	ENSG00000142949.12	557.53480	168.10780	1.72960	16.37080	12.81320	K562	SBDS
PTPRF	ENSG00000142949.12	568.39900	229.32930	1.30940	6.41070	4.33080	K562	SF1
PTPRF	ENSG00000142949.12	475.33880	298.63510	0.67050	2.64700	1.84860	K562	SF3A3
PTPRF	ENSG00000142949.12	230.65050	113.22210	1.02650	5.40990	4.01700	K562	SF3B1
PTPRF	ENSG00000142949.12	753.21690	279.58620	1.42970	8.21250	5.55280	K562	SFPQ
PTPRF	ENSG00000142949.12	300.39990	145.59900	1.04480	8.08230	5.98800	K562	SLBP
PTPRF	ENSG00000142949.12	658.79460	305.96680	1.10640	9.32130	7.71420	K562	SRPK2
PTPRF	ENSG00000142949.12	74.31380	122.33820	-0.71920	2.35550	1.69550	K562	SRSF1
PTPRF	ENSG00000142949.12	540.35800	327.50970	0.72230	7.88540	5.91700	K562	SRSF7
PTPRF	ENSG00000142949.12	264.88410	172.12050	0.62180	3.00490	1.58200	K562	SSRP1
PTPRF	ENSG00000142949.12	312.33680	157.42220	0.98840	6.81740	4.78320	K562	STAU1
PTPRF	ENSG00000142949.12	319.75740	164.53130	0.95850	3.90610	1.95100	K562	STIP1
PTPRF	ENSG00000142949.12	820.70760	354.85840	1.20950	20.98710	17.83100	K562	SUCLG1
PTPRF	ENSG00000142949.12	262.15560	115.88690	1.17760	3.32650	2.20360	K562	SUPV3L1
PTPRF	ENSG00000142949.12	167.51640	390.24210	-1.22010	13.61580	11.79300	K562	SYNCRIP
PTPRF	ENSG00000142949.12	190.62980	119.41620	0.67470	2.01250	1.32140	K562	TIA1
PTPRF	ENSG00000142949.12	299.00670	118.71500	1.33260	10.64560	8.71390	K562	TIAL1
PTPRF	ENSG00000142949.12	192.16630	117.23900	0.71280	2.97200	1.83080	K562	TRA2A
PTPRF	ENSG00000142949.12	384.79790	153.43870	1.32630	13.20570	10.15240	K562	TRIP6
PTPRF	ENSG00000142949.12	364.87130	122.72040	1.57190	14.63110	12.24190	K562	UCHL5
PTPRF	ENSG00000142949.12	544.79420	320.80400	0.76390	6.82650	5.75320	K562	UPF1
PTPRF	ENSG00000142949.12	744.19220	476.81120	0.64220	3.23120	1.79560	K562	UTP18
PTPRF	ENSG00000142949.12	487.97720	274.49350	0.82990	6.40010	5.03540	K562	WDR3
PTPRF	ENSG00000142949.12	513.86120	285.49900	0.84780	6.13750	4.92920	K562	WDR43
PTPRF	ENSG00000142949.12	831.67560	380.63920	1.12750	10.99630	8.61970	K562	WRN
PTPRF	ENSG00000142949.12	262.08730	125.07160	1.06720	4.35230	2.70780	K562	XRN2
PTPRF	ENSG00000142949.12	713.76070	361.53780	0.98120	7.70980	6.14880	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PTPRF is not available on ENCORE database.

6 RBPs can affect the splicing of PTPRF :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PTPRF	ENSG00000142949.12	chr1	+	44067741	44067768	44064509	44064584	44069086	44069204	0.08700	0.00000	0.00000	included	HepG2	U2AF1
SE	PTPRF	ENSG00000142949.12	chr1	+	44010701	44010837	44003868	44003948	44019162	44019190	-0.09200	0.00308	0.03587	excluded	HepG2	U2AF2
SE	PTPRF	ENSG00000142949.12	chr1	+	44069281	44069860	44069086	44069204	44070573	44070671	-0.22000	0.00000	0.00000	excluded	HepG2	PTBP1
SE	PTPRF	ENSG00000142949.12	chr1	+	44069281	44069860	44069086	44069204	44070573	44070671	-0.07800	0.00000	0.00000	excluded	HepG2	SRSF1
SE	PTPRF	ENSG00000142949.12	chr1	+	44067741	44067768	44064509	44064584	44069086	44069204	-0.05300	0.00014	0.02476	excluded	HepG2	RBFOX2
A3SS	PTPRF	ENSG00000142949.12	chr1	+	44084300	44084420	44084315	44084420	44083406	44083582	-0.05200	0.00002	0.00430	shorter	HepG2	RBM22

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PTPRF

General Information

Functions

Localization

Domains (AlphaFold: PTPRF)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PTPRF is not avaliable on ENCORE database.

53 proteins are bound to PTPRF RNA:

eCLIP assay for PTPRF is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PTPRF is not available on ENCORE database.

121 RBPs can affect the gene expression of PTPRF :

The Knockdown/knockout RNA-Seq assay for PTPRF is not available on ENCORE database.

6 RBPs can affect the splicing of PTPRF :

The Knockdown/knockout RNA-Seq assay for PTPRF is not avaliable on ENCORE database.