PTGR1

General Information

Gene Name       : PTGR1
Gene ID             : ENSG00000106853.19
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PTGR1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PTGR1ENSG00000106853.191.992.132.06ENCSR000AEF
HepG2PTGR1ENSG00000106853.1922.0329.5925.81ENCSR985KAT
K562PTGR1ENSG00000106853.190.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PTGR1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on PTGR1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for PTGR1 is not avaliable on ENCORE database.






NO known proteins are bound to PTGR1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for PTGR1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PTGR1 is not available on ENCORE database.

  • 77 RBPs can affect the levels of PTGR1.  








The Knockdown/knockout RNA-Seq assay for PTGR1 is not available on ENCORE database.





77 RBPs can affect the gene expression of PTGR1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PTGR1ENSG00000106853.12335.08750181.808500.882004.687903.48880HepG2ABCF1
PTGR1ENSG00000106853.12214.68640119.746400.842105.407204.61300HepG2ACO1
PTGR1ENSG00000106853.12705.14930289.960701.2820013.7415012.64910HepG2AKAP1
PTGR1ENSG00000106853.12199.66210112.979600.821403.815702.59830HepG2AKAP8
PTGR1ENSG00000106853.12188.67930120.320700.649003.020102.22270HepG2AKAP8L
PTGR1ENSG00000106853.12367.91590239.919400.616703.437602.56270HepG2ASCC1
PTGR1ENSG00000106853.12271.92020186.358700.545003.032902.31910HepG2AUH
PTGR1ENSG00000106853.12188.6018067.636501.479406.777303.70290HepG2CDC40
PTGR1ENSG00000106853.12905.55420227.939601.9900033.1464030.94050HepG2CIRBP
PTGR1ENSG00000106853.12181.94010119.734500.603502.833802.16260HepG2CKAP4
PTGR1ENSG00000106853.12336.06920101.181501.7317013.0409011.42970HepG2CNOT7
PTGR1ENSG00000106853.12472.79990266.924200.824709.202308.15740HepG2CELF1
PTGR1ENSG00000106853.12399.96820287.011700.478703.729402.89010HepG2DAZAP1
PTGR1ENSG00000106853.12382.40170171.419101.1575010.720609.48430HepG2DDX21
PTGR1ENSG00000106853.12271.14630167.565500.694203.781402.70200HepG2DDX24
PTGR1ENSG00000106853.1281.43230173.67630-1.092705.152703.30990HepG2DDX28
PTGR1ENSG00000106853.12531.14230277.763100.935108.045907.02860HepG2DDX3X
PTGR1ENSG00000106853.12109.40100228.78710-1.064404.649403.39400HepG2DDX59
PTGR1ENSG00000106853.12549.89540238.598001.2045011.7533010.58670HepG2DDX6
PTGR1ENSG00000106853.12241.73440114.568501.077107.896406.86330HepG2DKC1
PTGR1ENSG00000106853.12381.62560187.241201.027207.617306.17100HepG2EEF2
PTGR1ENSG00000106853.12325.52950152.006701.098608.360206.86900HepG2EIF3D
PTGR1ENSG00000106853.12263.21750161.756700.702303.944702.68080HepG2EIF3G
PTGR1ENSG00000106853.12177.23700117.026200.598702.431001.64970HepG2EWSR1
PTGR1ENSG00000106853.12635.86810201.810501.6556010.311308.38360HepG2FTO
PTGR1ENSG00000106853.12285.01420181.610900.650102.860201.72720HepG2FUS
PTGR1ENSG00000106853.12458.93870228.398101.006708.190107.13010HepG2GPKOW
PTGR1ENSG00000106853.12171.19510114.332100.582302.706301.73750HepG2HDGF
PTGR1ENSG00000106853.12336.60940174.953800.944006.703505.76380HepG2HNRNPA1
PTGR1ENSG00000106853.12144.37120224.50880-0.637003.277802.50190HepG2HNRNPF
PTGR1ENSG00000106853.1294.66840240.22860-1.343508.937707.73810HepG2HNRNPK
PTGR1ENSG00000106853.12192.10870261.44650-0.444602.275201.65620HepG2HNRNPL
PTGR1ENSG00000106853.12317.31060193.319800.714805.593204.75610HepG2HNRNPU
PTGR1ENSG00000106853.12271.50700123.049101.141703.973902.49130HepG2HSPD1
PTGR1ENSG00000106853.12242.0750098.632301.295207.643205.38710HepG2ILF3
PTGR1ENSG00000106853.12106.30020257.27510-1.275207.996506.97030HepG2MATR3
PTGR1ENSG00000106853.12304.59880148.584801.035507.777506.48470HepG2MSI2
PTGR1ENSG00000106853.12168.40050284.60010-0.757005.180604.14180HepG2NOL12
PTGR1ENSG00000106853.12309.67140193.257800.680103.758802.88860HepG2NSUN2
PTGR1ENSG00000106853.12221.0885092.465001.257506.251604.88160HepG2PABPC1
PTGR1ENSG00000106853.1293.73520234.52390-1.323108.923807.64550HepG2PABPC4
PTGR1ENSG00000106853.12134.10260191.34990-0.512902.179801.42000HepG2PARN
PTGR1ENSG00000106853.12370.25840171.920001.106707.671506.03220HepG2PCBP2
PTGR1ENSG00000106853.12314.52000176.880400.830305.292604.21110HepG2PRPF8
PTGR1ENSG00000106853.12407.89500288.184000.501101.888001.32810HepG2PUM2
PTGR1ENSG00000106853.12442.99070121.971501.8606033.5413031.84110HepG2PUS1
PTGR1ENSG00000106853.121631.20790165.903103.2974021.9438020.13200HepG2RAVER1
PTGR1ENSG00000106853.12557.73510178.834501.6409028.5588027.24360HepG2RBM22
PTGR1ENSG00000106853.12155.40070224.94840-0.533601.906801.33760HepG2RBM25
PTGR1ENSG00000106853.12293.80310183.967200.675303.061201.94510HepG2RCC2
PTGR1ENSG00000106853.12157.75100237.15480-0.588202.269601.70490HepG2RECQL
PTGR1ENSG00000106853.12372.90760241.896200.624303.651702.88490HepG2RPLP0
PTGR1ENSG00000106853.12245.97460174.624900.494101.954201.38500HepG2SF3A3
PTGR1ENSG00000106853.12687.73050215.747501.6724027.7529025.78280HepG2SF3B1
PTGR1ENSG00000106853.12626.16900240.054501.383102.317601.60510HepG2SNRNP70
PTGR1ENSG00000106853.12805.09640201.987201.9948057.1187055.60260HepG2SRFBP1
PTGR1ENSG00000106853.12452.54360248.700100.863508.228207.51190HepG2SRSF1
PTGR1ENSG00000106853.1279.18730232.12590-1.551609.425707.49930HepG2SRSF3
PTGR1ENSG00000106853.12361.89400268.238400.432002.666602.04920HepG2SRSF5
PTGR1ENSG00000106853.121138.30110202.310702.49210111.43260109.04520HepG2SRSF9
PTGR1ENSG00000106853.12717.94760175.373202.0334056.7871055.20090HepG2SSB
PTGR1ENSG00000106853.12244.61120122.562200.996906.086004.27900HepG2SSRP1
PTGR1ENSG00000106853.12200.56450124.114100.692302.639001.34520HepG2SUGP2
PTGR1ENSG00000106853.12473.75490223.476601.0839013.0944012.01050HepG2TAF15
PTGR1ENSG00000106853.12268.63350120.385201.157905.022203.61840HepG2TBRG4
PTGR1ENSG00000106853.12131.22520205.41330-0.646502.434201.64790HepG2TIA1
PTGR1ENSG00000106853.12315.79370187.835500.749405.391904.74060HepG2TIAL1
PTGR1ENSG00000106853.12256.91350189.526200.438802.327901.80180HepG2TRIM56
PTGR1ENSG00000106853.12711.59060157.046302.1798038.4701036.06940HepG2U2AF1
PTGR1ENSG00000106853.12508.63780240.676601.079403.097802.05330HepG2U2AF2
PTGR1ENSG00000106853.12152.31230280.93500-0.883204.177003.13790HepG2UBE2L3
PTGR1ENSG00000106853.12589.08060154.865001.9274026.2669024.56540HepG2UPF1
PTGR1ENSG00000106853.12319.10640209.000700.610402.648901.66700HepG2UPF2
PTGR1ENSG00000106853.12248.35560159.184200.641603.733302.53520HepG2UTP18
PTGR1ENSG00000106853.12469.92020224.610901.064909.607808.27430HepG2XRN2
PTGR1ENSG00000106853.12322.90330170.322700.922709.100908.25580HepG2ZNF622
PTGR1ENSG00000106853.1298.47770165.75800-0.751202.860501.54060HepG2ZRANB2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PTGR1 is not available on ENCORE database.





3 RBPs can affect the splicing of PTGR1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPTGR1ENSG00000106853.12chr9-1143264361143265421143248561143255111143323701143324890.164000.000500.04659includedHepG2G3BP1
SEPTGR1ENSG00000106853.12chr9-114326436114326542114324856114325511114332370114332489-0.091000.000000.00008excludedHepG2U2AF2
MXEPTGR1ENSG00000106853.12chr9-1143323701143324891143370131143371221143252461143255111143410751143412310.262000.000290.023151includedHepG2LARP4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PTGR1 is not avaliable on ENCORE database.