LSMD1

General Information

Gene Name       : LSMD1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LSMD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LSMD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LSMD1 RNA is bound by 4 proteins.  







eCLIP assay for LSMD1 is not avaliable on ENCORE database.





4 proteins are bound to LSMD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1777600297760099-3'-UTR,CDS,intron-Distal,intron-Proximal4.5532610.03141HepG2LARP4
chr1777604507760510-3'-UTR,5'-UTR,CDS,intron-Distal4.473756.05264HepG2DDX3X
chr1777604447760517-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.402447.50052K562DDX3X
chr1777604767760516-3'-UTR,5'-UTR,CDS,intron-Distal3.582704.36276HepG2LARP4
chr1777606987760739-5'-UTR,CDS,intron-Distal3.269743.81620HepG2LARP4
chr1777603427760376-CDS,intron-Distal5.138896.07551HepG2LARP4
chr1777600997760161-CDS,intron-Distal5.9524115.06893HepG2LARP4
chr1777603767760419-CDS,intron-Distal4.111006.03373HepG2LARP4
chr1777834757783616-intron-Distal6.0407448.60367K562PTBP1
chr1777852627785354-intron-Distal3.333985.28799K562MATR3
chr1777846807784762-intron-Distal4.370513.72005K562MATR3
chr1777857017785824-intron-Distal5.218268.82141K562MATR3
chr1777852607785339-intron-Distal5.3408118.09984K562PTBP1
chr1777856747785772-intron-Distal6.8335925.83517K562PTBP1
chr1777849847785023-intron-Distal4.573039.08502K562PTBP1
chr1777831137783161-intron-Distal4.399434.07628HepG2PTBP1
chr1777848567784956-intron-Distal5.9546324.24968K562PTBP1
chr1777831227783195-intron-Distal3.124593.18966K562MATR3
chr1777851327785242-intron-Distal5.0735516.59938K562PTBP1
chr1777858377785876-intron-Distal3.806293.06015K562MATR3
chr1777835407783596-intron-Distal5.280447.11021HepG2PTBP1
chr1777851377785226-intron-Distal4.396103.41738HepG2PTBP1
chr1777832757783367-intron-Distal5.1008013.60120HepG2PTBP1
chr1777847057784744-intron-Distal5.607338.93487K562PTBP1
chr1777852737785349-intron-Distal4.792119.88335HepG2PTBP1
chr1777832717783361-intron-Distal5.7781733.75326K562PTBP1
chr1777848247784920-intron-Distal4.974818.34140K562MATR3
chr1777858717785927-intron-Distal6.2092215.10895K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LSMD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LSMD1 is not available on ENCORE database.

  • 61 RBPs can affect the levels of LSMD1.  








The Knockdown/knockout RNA-Seq assay for LSMD1 is not available on ENCORE database.





61 RBPs can affect the gene expression of LSMD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LSMD1ENSG00000183011.963.49830122.22060-0.944702.290501.31270HepG2AATF
LSMD1ENSG00000183011.9147.0420092.442400.669502.403601.47140HepG2ADAR
LSMD1ENSG00000183011.9643.04410294.041701.1288010.504609.53440HepG2AKAP1
LSMD1ENSG00000183011.9227.97860314.96360-0.466302.618801.94890HepG2AUH
LSMD1ENSG00000183011.9208.5330061.131601.770205.322504.25900HepG2CNOT7
LSMD1ENSG00000183011.961.98310125.25760-1.015002.677401.35320HepG2CSTF2T
LSMD1ENSG00000183011.9438.49140281.624300.638703.789503.06920HepG2DDX3X
LSMD1ENSG00000183011.9155.0271093.089600.735702.879502.16530HepG2DNAJC21
LSMD1ENSG00000183011.9138.8535092.257200.589702.275401.67140HepG2DNAJC2
LSMD1ENSG00000183011.9206.00020361.61950-0.811807.098506.21060HepG2ETF1
LSMD1ENSG00000183011.9141.86470223.86250-0.658103.096302.26790HepG2FUBP3
LSMD1ENSG00000183011.9176.94960104.533300.759302.305501.66720HepG2HNRNPC
LSMD1ENSG00000183011.9175.00520103.842500.752903.769603.07280HepG2HNRNPU
LSMD1ENSG00000183011.9185.5586092.619801.002403.087402.31210HepG2PPIL4
LSMD1ENSG00000183011.9153.56710237.39570-0.628402.976502.41270HepG2PTBP1
LSMD1ENSG00000183011.9261.14520183.683600.507502.310701.75910HepG2PUF60
LSMD1ENSG00000183011.9305.32480194.987400.646904.916004.17150HepG2PUM1
LSMD1ENSG00000183011.9154.23920257.08160-0.737104.165703.42090HepG2QKI
LSMD1ENSG00000183011.9140.39710302.24710-1.106208.994808.18260HepG2RBM22
LSMD1ENSG00000183011.9276.24810133.262601.051602.516401.57430HepG2RBM27
LSMD1ENSG00000183011.9193.0938092.478401.062007.020406.06090HepG2SAFB2
LSMD1ENSG00000183011.9256.14580176.122200.540303.051602.31920HepG2SLBP
LSMD1ENSG00000183011.9193.81930107.848800.845604.924104.10640HepG2SMN1
LSMD1ENSG00000183011.9187.12080341.37730-0.867407.317606.60910HepG2SRFBP1
LSMD1ENSG00000183011.9276.84760181.359800.610103.805503.09300HepG2SRSF5
LSMD1ENSG00000183011.9149.13700209.87800-0.492902.244301.73620HepG2SRSF9
LSMD1ENSG00000183011.9331.13850206.256900.682905.245104.43630HepG2SUCLG1
LSMD1ENSG00000183011.9306.09560146.407701.063905.119804.24470HepG2SUPV3L1
LSMD1ENSG00000183011.999.90670231.89460-1.214808.798007.88920HepG2TAF15
LSMD1ENSG00000183011.9133.71550213.05560-0.672103.385202.46460HepG2TIA1
LSMD1ENSG00000183011.9291.23920100.915301.5290012.0014011.08820HepG2TIAL1
LSMD1ENSG00000183011.9203.00920101.803500.995706.741605.92880HepG2TRIM56
LSMD1ENSG00000183011.9326.74880179.449800.864506.340404.93180HepG2TUFM
LSMD1ENSG00000183011.9128.94930193.48750-0.585402.764002.06440HepG2UPF1
LSMD1ENSG00000183011.9257.81990186.805600.464702.195001.64790HepG2UTP3
LSMD1ENSG00000183011.9278.19090144.123400.948704.206803.31950HepG2XRN2
LSMD1ENSG00000183011.9233.01090125.672900.890606.221405.27880HepG2ZC3H8
LSMD1ENSG00000183011.9279.37220202.398900.464902.384201.85060K562AGGF1
LSMD1ENSG00000183011.9429.09930300.441300.514102.643401.43300K562APOBEC3C
LSMD1ENSG00000183011.9228.40510314.13140-0.459801.963801.45340K562AQR
LSMD1ENSG00000183011.9305.95290418.78110-0.452902.967401.95810K562CELF1
LSMD1ENSG00000183011.9211.04270131.900000.678003.555902.35410K562DDX3X
LSMD1ENSG00000183011.9206.6668093.526501.143805.548403.70830K562EEF2
LSMD1ENSG00000183011.9192.47110108.198700.830903.662401.44550K562EIF3H
LSMD1ENSG00000183011.9197.68460143.317300.463901.897101.37740K562FXR1
LSMD1ENSG00000183011.96.6662032.47630-2.284503.748802.89780K562G3BP2
LSMD1ENSG00000183011.9430.66360314.421300.453802.433501.72260K562GRSF1
LSMD1ENSG00000183011.9216.18020123.301100.809902.387001.52500K562HNRNPM
LSMD1ENSG00000183011.9173.4889091.720700.919403.139202.02270K562IGF2BP2
LSMD1ENSG00000183011.9145.2408093.289600.638602.477001.36600K562IGF2BP3
LSMD1ENSG00000183011.9153.2954096.388000.669302.674601.84880K562MAGOH
LSMD1ENSG00000183011.9163.2555096.191400.763103.551702.49280K562MATR3
LSMD1ENSG00000183011.9155.6804089.135900.804402.825901.51370K562NONO
LSMD1ENSG00000183011.9260.83530170.175900.616003.295602.38640K562PPIG
LSMD1ENSG00000183011.9179.5361087.906901.030104.387603.44420K562PRPF8
LSMD1ENSG00000183011.9144.2425093.647500.623102.399701.77390K562PTBP1
LSMD1ENSG00000183011.9340.17590208.855800.703704.333303.67630K562PUS1
LSMD1ENSG00000183011.9319.80810203.505100.652004.369703.64240K562RBM15
LSMD1ENSG00000183011.9147.5003089.793000.715902.864502.00600K562RBM22
LSMD1ENSG00000183011.9149.5353089.505200.740302.189101.46650K562RPS19
LSMD1ENSG00000183011.9101.6436053.100100.936602.318101.41160K562RPS3
LSMD1ENSG00000183011.998.3420051.268600.939602.540201.53800K562SRSF4
LSMD1ENSG00000183011.9151.7535086.706300.807403.498102.29210K562SRSF5
LSMD1ENSG00000183011.9176.1152092.912600.922504.568703.65480K562TARDBP
LSMD1ENSG00000183011.9161.6485089.625100.850803.860902.87170K562TIA1
LSMD1ENSG00000183011.9154.3489087.952800.811303.196802.01010K562TRA2A
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LSMD1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of LSMD1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for LSMD1 is not avaliable on ENCORE database.