IFT80

General Information

Gene Name       : IFT80
Gene ID             : ENSG00000068885.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: IFT80)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878IFT80ENSG00000068885.1417.4312.5314.98ENCSR000AEF
HepG2IFT80ENSG00000068885.145.0715.1410.11ENCSR985KAT
K562IFT80ENSG00000068885.149.8011.0310.41ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for IFT80 is not avaliable on ENCORE database.



Proteins bound to RNA
  • IFT80 RNA is bound by 1 proteins.  







eCLIP assay for IFT80 is not avaliable on ENCORE database.





1 proteins are bound to IFT80 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3160075275160075312-3'-UTR,CDS,intron-Distal,intron-Proximal4.530344.34038HepG2BCLAF1
chr3160073914160073939-3'-UTR,CDS,intron-Distal,intron-Proximal4.406384.34038HepG2BCLAF1
chr3160093576160093669-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.992966.39464HepG2BCLAF1
chr3160099407160099479-5'-UTR,CDS,intron-Distal,intron-Proximal4.717077.09561HepG2BCLAF1
chr3159997054159997119-CDS,intron-Distal3.741303.27569HepG2BCLAF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for IFT80 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for IFT80 is not available on ENCORE database.

  • 98 RBPs can affect the levels of IFT80.  








The Knockdown/knockout RNA-Seq assay for IFT80 is not available on ENCORE database.





98 RBPs can affect the gene expression of IFT80 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
IFT80ENSG00000068885.10361.25590518.77700-0.522102.440201.59710HepG2BCLAF1
IFT80ENSG00000068885.10302.60290630.90810-1.0600012.5806011.42680HepG2BOP1
IFT80ENSG00000068885.10482.19750699.36910-0.536402.878402.20380HepG2CKAP4
IFT80ENSG00000068885.10693.79900405.197600.775802.192601.51710HepG2CNOT7
IFT80ENSG00000068885.10331.35950579.21840-0.805707.130006.06690HepG2CPSF6
IFT80ENSG00000068885.10409.83510543.99050-0.408502.508201.45700HepG2CPSF7
IFT80ENSG00000068885.10693.03590985.59920-0.508106.909005.98040HepG2CELF1
IFT80ENSG00000068885.10837.978701059.97540-0.339003.901003.04470HepG2DAZAP1
IFT80ENSG00000068885.10421.75600600.90720-0.510704.418002.97640HepG2DDX1
IFT80ENSG00000068885.10432.59670736.89860-0.768406.815305.87630HepG2DDX3X
IFT80ENSG00000068885.10384.08940632.92480-0.720605.230904.40680HepG2DDX6
IFT80ENSG00000068885.10477.20840583.99850-0.291302.249001.64860HepG2DNAJC2
IFT80ENSG00000068885.10375.56340608.53160-0.696305.385304.57540HepG2EIF2S1
IFT80ENSG00000068885.10763.190901001.59950-0.392203.102402.24190HepG2EIF4G2
IFT80ENSG00000068885.10809.49640572.236400.500303.515302.29000HepG2ESF1
IFT80ENSG00000068885.10443.74570683.54100-0.623303.833802.85010HepG2EWSR1
IFT80ENSG00000068885.10894.00600629.418300.506203.645702.88660HepG2G3BP1
IFT80ENSG00000068885.10483.04120656.61770-0.442902.481601.87180HepG2GPKOW
IFT80ENSG00000068885.10455.87140637.18900-0.483103.174602.42790HepG2HNRNPK
IFT80ENSG00000068885.10778.70100965.62140-0.310402.661002.00000HepG2HNRNPL
IFT80ENSG00000068885.10384.65510626.61980-0.704005.645104.77960HepG2HNRNPLL
IFT80ENSG00000068885.10355.03980460.21550-0.374302.140901.30410HepG2HNRNPM
IFT80ENSG00000068885.10495.47640657.30440-0.407704.008003.28950HepG2HNRNPU
IFT80ENSG00000068885.10343.20470502.62880-0.550404.222703.34490HepG2IGF2BP1
IFT80ENSG00000068885.10435.35790639.81340-0.555403.911103.12140HepG2IGF2BP2
IFT80ENSG00000068885.10721.46810964.36320-0.418602.276201.52980HepG2LARP4
IFT80ENSG00000068885.10466.81570678.67600-0.539903.704302.94550HepG2MAGOH
IFT80ENSG00000068885.10362.96850698.58800-0.944609.245508.12820HepG2NCBP2
IFT80ENSG00000068885.10156.69020370.21210-1.240403.839502.78060HepG2PABPC1
IFT80ENSG00000068885.10437.73310586.26470-0.421503.456102.64180HepG2PPIL4
IFT80ENSG00000068885.10461.967401003.26730-1.1188019.7834018.38370HepG2PUF60
IFT80ENSG00000068885.10860.843601064.20830-0.306002.634201.97930HepG2PUM2
IFT80ENSG00000068885.10467.41420743.80940-0.670203.354402.58060HepG2RAVER1
IFT80ENSG00000068885.10638.63560855.58520-0.421904.265603.65820HepG2RBM22
IFT80ENSG00000068885.10427.17480720.32640-0.753803.862902.60580HepG2RCC2
IFT80ENSG00000068885.10911.39150637.890900.514706.032905.28520HepG2NELFE
IFT80ENSG00000068885.10826.48990594.094100.476205.180204.37170HepG2RECQL
IFT80ENSG00000068885.10350.48500549.81500-0.649605.239704.33910HepG2RPLP0
IFT80ENSG00000068885.10253.48280494.98860-0.965505.931805.07220HepG2RPS19
IFT80ENSG00000068885.10571.54720406.454800.491702.292701.56340HepG2RPS3A
IFT80ENSG00000068885.10311.88450448.07860-0.522702.237501.52350HepG2RRP9
IFT80ENSG00000068885.10455.50040585.36410-0.361902.999402.33490HepG2SAFB2
IFT80ENSG00000068885.10364.63030747.89710-1.036409.772708.44430HepG2SF3A3
IFT80ENSG00000068885.10827.34560961.83400-0.217301.952101.34400HepG2SLBP
IFT80ENSG00000068885.10449.03710682.64270-0.604308.189407.17520HepG2SMN1
IFT80ENSG00000068885.10477.83820622.88220-0.382403.044302.55340HepG2SRSF1
IFT80ENSG00000068885.10762.47160990.49690-0.377503.891603.17100HepG2SRSF5
IFT80ENSG00000068885.10901.549501126.53930-0.321402.038301.48850HepG2SUCLG1
IFT80ENSG00000068885.10300.27630450.39360-0.584904.158103.01790HepG2SUPT6H
IFT80ENSG00000068885.10403.75720584.29730-0.533202.335301.70710HepG2SUPV3L1
IFT80ENSG00000068885.10840.10450559.851100.585406.932906.11490HepG2TAF15
IFT80ENSG00000068885.10416.14400610.68460-0.553303.998303.14660HepG2TARDBP
IFT80ENSG00000068885.10230.18260391.67130-0.766904.255903.05590HepG2TFIP11
IFT80ENSG00000068885.10362.84270638.72890-0.815909.817508.97820HepG2TIAL1
IFT80ENSG00000068885.10440.19210644.40130-0.549806.272505.48490HepG2TRIM56
IFT80ENSG00000068885.10778.74120980.03590-0.331702.731401.86380HepG2TUFM
IFT80ENSG00000068885.10353.54380570.60190-0.690605.511104.64210HepG2U2AF1
IFT80ENSG00000068885.10223.42970834.06950-1.900304.533403.25320HepG2U2AF2
IFT80ENSG00000068885.10476.70520663.26830-0.476505.067604.16660HepG2UPF1
IFT80ENSG00000068885.10497.00490640.36270-0.365602.461101.88900HepG2UTP3
IFT80ENSG00000068885.10554.54540423.882400.387503.331602.60560HepG2ZC3H8
IFT80ENSG00000068885.10427.56830729.47110-0.7707013.3487012.37340HepG2ZNF622
IFT80ENSG00000068885.10340.52680647.61750-0.927404.086603.42080K562AGGF1
IFT80ENSG00000068885.10475.59980711.49440-0.581102.380001.47900K562AKAP8
IFT80ENSG00000068885.10301.47780673.84110-1.160405.202104.29400K562AKAP8L
IFT80ENSG00000068885.101347.93420873.781400.625308.420406.17160K562APOBEC3C
IFT80ENSG00000068885.10667.43530891.78250-0.418103.063802.45280K562AQR
IFT80ENSG00000068885.10464.85280706.95670-0.604802.315101.48720K562ATP5C1
IFT80ENSG00000068885.10757.37680553.158200.453202.815801.38390K562BUD13
IFT80ENSG00000068885.101558.824801217.388300.356603.879102.71280K562CELF1
IFT80ENSG00000068885.10224.84350364.17670-0.695705.310603.80240K562DDX3X
IFT80ENSG00000068885.10248.77090369.21830-0.569704.280702.54360K562DDX6
IFT80ENSG00000068885.10833.56920681.194000.291102.354201.68220K562EIF2S2
IFT80ENSG00000068885.10407.13640543.98470-0.418102.972702.14790K562EIF3G
IFT80ENSG00000068885.10219.48190342.61240-0.642504.976803.36060K562EIF4B
IFT80ENSG00000068885.101327.70000990.225100.423005.953704.59320K562EIF4G2
IFT80ENSG00000068885.10889.22700606.895000.551003.496401.62930K562ESF1
IFT80ENSG00000068885.10232.83820332.09480-0.512303.057601.68270K562EWSR1
IFT80ENSG00000068885.10366.99550570.83820-0.637304.257303.18920K562FIP1L1
IFT80ENSG00000068885.10691.24610463.921800.575204.355703.18340K562FTO
IFT80ENSG00000068885.10251.15380358.92410-0.515103.570701.51810K562FUBP3
IFT80ENSG00000068885.10651.19380456.048000.513804.387503.04010K562HNRNPA1
IFT80ENSG00000068885.10696.49700317.213601.1346012.4250011.23620K562HNRNPC
IFT80ENSG00000068885.10281.25470469.48470-0.739205.135603.82320K562HNRNPM
IFT80ENSG00000068885.10433.29100684.55740-0.659802.386201.41260K562MAK16
IFT80ENSG00000068885.10591.27290450.825000.391203.217202.34540K562MTPAP
IFT80ENSG00000068885.10372.06440561.59070-0.594002.076901.33510K562NAA15
IFT80ENSG00000068885.10256.58480379.93200-0.566303.797402.33860K562NCBP2
IFT80ENSG00000068885.10687.44940500.927900.456605.054604.08760K562NSUN2
IFT80ENSG00000068885.10289.95370473.83910-0.708603.675001.57640K562PABPC4
IFT80ENSG00000068885.101326.95670392.376801.7577028.6830026.22990K562PCBP3
IFT80ENSG00000068885.101000.31120300.983501.7326044.3843041.66660K562POLR2G
IFT80ENSG00000068885.10461.20580647.95970-0.490503.543402.59600K562PPIG
IFT80ENSG00000068885.10375.96350634.38520-0.754802.955101.43990K562PPP1R8
IFT80ENSG00000068885.10409.82150559.14550-0.448203.383402.65740K562PTBP1
IFT80ENSG00000068885.101527.378701149.053600.410504.821403.38230K562PUM1
IFT80ENSG00000068885.101448.336701126.003900.363104.537303.29890K562PUM2
IFT80ENSG00000068885.10264.44420668.51050-1.338006.230105.45480K562PUS1
IFT80ENSG00000068885.10313.67790651.15970-1.053704.497603.76050K562RBM15
IFT80ENSG00000068885.10307.57550455.24710-0.565703.224901.38620K562RECQL
IFT80ENSG00000068885.10232.39710487.98110-1.070204.189002.62540K562SF1
IFT80ENSG00000068885.10347.83040466.07800-0.422202.783601.92550K562SF3B4
IFT80ENSG00000068885.10314.61850560.39050-0.832803.448802.02330K562SNRNP200
IFT80ENSG00000068885.10621.96220506.374100.296502.179801.34010K562SRPK2
IFT80ENSG00000068885.10257.71850548.11930-1.0887013.4558011.89620K562SRSF1
IFT80ENSG00000068885.101075.59290749.031600.521903.554001.99270K562SSRP1
IFT80ENSG00000068885.10371.72910535.14700-0.525703.544802.60110K562TIA1
IFT80ENSG00000068885.10664.16440531.142800.322302.512501.82600K562UPF1
IFT80ENSG00000068885.10365.58840677.55210-0.890103.366201.88920K562UTP18
IFT80ENSG00000068885.10584.56920472.593000.306702.263801.49140K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for IFT80 is not available on ENCORE database.





5 RBPs can affect the splicing of IFT80 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEIFT80ENSG00000068885.10chr3-160083880160083940160075276160075366160093599160093668-0.296000.008740.07293excludedK562AQR
SEIFT80ENSG00000068885.10chr3-1601093331601094311601023511601024341601169331601170350.360000.000000.00551includedHepG2SND1
SEIFT80ENSG00000068885.10chr3-1601093331601094311601023511601024341601169331601170350.617000.000070.00865includedHepG2TIAL1
SEIFT80ENSG00000068885.10chr3-1601093331601094311601023511601024341601169331601170350.223000.000660.06143includedHepG2SUPV3L1
SEIFT80ENSG00000068885.10chr3-1601093331601094311601023511601024341601169331601170350.482000.000020.00176includedHepG2HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for IFT80 is not avaliable on ENCORE database.