GCNT2

General Information

Gene Name       : GCNT2
Gene ID             : ENSG00000111846.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GCNT2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GCNT2ENSG00000111846.1711.959.9610.96ENCSR000AEF
HepG2GCNT2ENSG00000111846.178.8314.5011.66ENCSR985KAT
K562GCNT2ENSG00000111846.171.031.071.05ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GCNT2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GCNT2 RNA is bound by 9 proteins.  







eCLIP assay for GCNT2 is not avaliable on ENCORE database.





9 proteins are bound to GCNT2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr61053004210530106+CDS,intron-Distal,intron-Proximal5.657476.01989HepG2PRPF8
chr61055709910557186+CDS,intron-Distal4.659585.13052HepG2SRSF9
chr61062644310626521+intron-Distal4.174113.77802HepG2U2AF2
chr61056998610570051+intron-Distal4.496285.20135HepG2QKI
chr61056952310569617+intron-Distal3.566484.45128HepG2HNRNPL
chr61057080210570950+intron-Distal4.542924.31720HepG2MATR3
chr61057013510570258+intron-Distal5.5922611.59253HepG2PTBP1
chr61057083610570951+intron-Distal3.381213.35050HepG2SUGP2
chr61059910810599202+intron-Distal4.592614.85866HepG2QKI
chr61059116710591321+intron-Distal4.479424.51735HepG2QKI
chr61055534510555436+intron-Distal3.665535.29525HepG2RBFOX2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GCNT2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GCNT2 is not available on ENCORE database.

  • 126 RBPs can affect the levels of GCNT2.  








The Knockdown/knockout RNA-Seq assay for GCNT2 is not available on ENCORE database.





126 RBPs can affect the gene expression of GCNT2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GCNT2ENSG00000111846.11852.62710500.176100.769403.597101.64940HepG2AARS
GCNT2ENSG00000111846.11571.43850759.30440-0.410102.284601.42420HepG2ABCF1
GCNT2ENSG00000111846.11492.46520656.51720-0.414804.079203.36780HepG2ACO1
GCNT2ENSG00000111846.111093.50680749.462200.544903.847903.23560HepG2AKAP1
GCNT2ENSG00000111846.111209.61300620.106900.9639012.6963011.12040HepG2ASCC1
GCNT2ENSG00000111846.111112.48390685.469700.698508.653306.34720HepG2ATP5C1
GCNT2ENSG00000111846.111194.83610918.243600.379804.559803.71640HepG2AUH
GCNT2ENSG00000111846.11791.45750443.510100.835408.994407.49560HepG2BCLAF1
GCNT2ENSG00000111846.11433.83210680.50560-0.649505.795104.96760HepG2BOP1
GCNT2ENSG00000111846.11968.22340569.038000.7667010.326708.10700HepG2BUD13
GCNT2ENSG00000111846.111138.12750663.765400.7778012.5911011.14270HepG2CALR
GCNT2ENSG00000111846.111315.91610931.009200.499103.271902.20600HepG2CCAR1
GCNT2ENSG00000111846.11445.10900656.35170-0.560306.962405.99430HepG2CKAP4
GCNT2ENSG00000111846.11946.43370685.897300.464402.156101.48640HepG2CNOT7
GCNT2ENSG00000111846.11768.52590517.572000.570206.391604.84830HepG2YBX3
GCNT2ENSG00000111846.11275.21920482.97360-0.811405.431303.32760HepG2CSTF2T
GCNT2ENSG00000111846.111201.55910693.706200.792405.765804.90240HepG2CELF1
GCNT2ENSG00000111846.111469.91950746.072300.9782030.9091028.94020HepG2DAZAP1
GCNT2ENSG00000111846.11741.02620509.553600.540204.809703.59410HepG2DDX24
GCNT2ENSG00000111846.11700.37840380.237500.881109.687707.34040HepG2DDX28
GCNT2ENSG00000111846.111223.59760717.906200.769208.265607.23580HepG2DDX3X
GCNT2ENSG00000111846.111360.51340757.350400.8450012.5017010.09240HepG2DDX47
GCNT2ENSG00000111846.11605.89440453.754700.417102.939101.54300HepG2DDX52
GCNT2ENSG00000111846.11844.64600501.689200.751506.846005.69410HepG2DDX55
GCNT2ENSG00000111846.111225.97560672.922100.8653011.791809.87880HepG2DDX5
GCNT2ENSG00000111846.111385.26760616.747801.1673016.0427014.71730HepG2DDX6
GCNT2ENSG00000111846.11871.95310490.162400.830905.810604.42540HepG2DHX30
GCNT2ENSG00000111846.11916.42040628.103100.544907.167606.17550HepG2DKC1
GCNT2ENSG00000111846.11678.29870508.197000.416403.655102.85280HepG2DNAJC21
GCNT2ENSG00000111846.11699.05200503.738400.472605.679004.79250HepG2DNAJC2
GCNT2ENSG00000111846.11732.22750541.428100.435402.792801.86810HepG2EEF2
GCNT2ENSG00000111846.11635.78410451.401900.494003.408002.17400HepG2EFTUD2
GCNT2ENSG00000111846.111246.81870592.843501.0724015.2826013.96040HepG2EIF2S1
GCNT2ENSG00000111846.11253.91930576.13850-1.1820015.2829012.86340HepG2EIF2S2
GCNT2ENSG00000111846.111536.00420655.137001.2292018.6644017.01820HepG2EIF4A3
GCNT2ENSG00000111846.111007.04600637.915100.658604.477503.61320HepG2EIF4B
GCNT2ENSG00000111846.11971.96800735.901500.401302.954202.09380HepG2EIF4G1
GCNT2ENSG00000111846.111800.89850704.972501.3530020.9218018.85990HepG2EIF4G2
GCNT2ENSG00000111846.11843.250501054.23910-0.322202.826602.22050HepG2ETF1
GCNT2ENSG00000111846.11367.11830641.51440-0.805208.119006.70120HepG2EWSR1
GCNT2ENSG00000111846.11509.56610392.794100.375402.506301.39580HepG2FAM120A
GCNT2ENSG00000111846.11925.86310417.640501.1484015.9287013.35950HepG2FKBP4
GCNT2ENSG00000111846.111154.10660697.864400.725705.172902.91470HepG2FMR1
GCNT2ENSG00000111846.11540.41090347.739900.635905.064104.01270HepG2FUBP3
GCNT2ENSG00000111846.111293.61410637.556201.0207010.261108.30740HepG2FUS
GCNT2ENSG00000111846.111180.57680661.080700.836507.885706.76440HepG2FXR1
GCNT2ENSG00000111846.111877.27800708.180601.4064026.3506024.60860HepG2GPKOW
GCNT2ENSG00000111846.11311.05160635.01220-1.029608.315806.40380HepG2GRSF1
GCNT2ENSG00000111846.11869.09840504.962100.783207.791704.99740HepG2GRWD1
GCNT2ENSG00000111846.11892.08050600.864700.570003.230601.52250HepG2GTF2F1
GCNT2ENSG00000111846.11765.20290626.772100.287802.436101.51230HepG2HDGF
GCNT2ENSG00000111846.111013.78910611.165700.730004.313302.54820HepG2HLTF
GCNT2ENSG00000111846.111014.22570685.580800.564907.471606.06670HepG2HNRNPA2B1
GCNT2ENSG00000111846.11866.33750570.700600.602105.616904.65600HepG2HNRNPC
GCNT2ENSG00000111846.11717.498001069.82800-0.576308.700607.51750HepG2HNRNPF
GCNT2ENSG00000111846.111017.15580679.665700.581507.562906.49690HepG2HNRNPL
GCNT2ENSG00000111846.11755.740501053.47820-0.479204.943704.00160HepG2IGF2BP1
GCNT2ENSG00000111846.111442.57930623.300401.2106020.3559018.71790HepG2IGF2BP2
GCNT2ENSG00000111846.11975.52130626.959900.637704.572603.25350HepG2KHSRP
GCNT2ENSG00000111846.11768.93600481.612400.674905.074002.89790HepG2CCAR2
GCNT2ENSG00000111846.11830.85100600.124900.469206.258304.75490HepG2KIF1C
GCNT2ENSG00000111846.111265.39500807.791900.647404.730003.08480HepG2KRR1
GCNT2ENSG00000111846.112061.05270661.311801.6399037.2921035.14140HepG2MAGOH
GCNT2ENSG00000111846.11234.02700665.00090-1.5067018.6879017.16890HepG2MATR3
GCNT2ENSG00000111846.11975.31140620.731700.651807.689606.40580HepG2MSI2
GCNT2ENSG00000111846.111204.13150689.278300.804705.973004.52310HepG2MTPAP
GCNT2ENSG00000111846.11859.96950521.189800.722409.019806.88210HepG2NAA15
GCNT2ENSG00000111846.111052.50940680.655500.628705.466204.59050HepG2NCBP2
GCNT2ENSG00000111846.11522.13680739.79480-0.502704.614603.62950HepG2NOL12
GCNT2ENSG00000111846.11731.30210460.436600.667403.746402.45880HepG2NONO
GCNT2ENSG00000111846.112202.23900627.029101.8123023.9072021.36500HepG2PABPC1
GCNT2ENSG00000111846.111866.57190606.122601.6226035.7636033.24890HepG2PABPC4
GCNT2ENSG00000111846.11953.53860593.009800.6851011.5993010.49400HepG2PCBP1
GCNT2ENSG00000111846.11858.80350511.603200.747206.677504.17670HepG2PHF6
GCNT2ENSG00000111846.11770.94090505.651700.608407.568506.39330HepG2PPIL4
GCNT2ENSG00000111846.111307.48170603.441901.1154030.4328029.00690HepG2PTBP1
GCNT2ENSG00000111846.111288.87050706.152300.8680013.1733012.00180HepG2PUF60
GCNT2ENSG00000111846.111157.64210749.557300.6270012.2024011.14370HepG2PUM1
GCNT2ENSG00000111846.111029.14050668.702000.6219010.850409.76690HepG2PUS1
GCNT2ENSG00000111846.111092.29390653.473700.7411011.5350010.38880HepG2QKI
GCNT2ENSG00000111846.11360.51920574.66100-0.672603.285601.40510HepG2RBM14
GCNT2ENSG00000111846.11778.50000593.095400.392303.044702.34100HepG2RBM25
GCNT2ENSG00000111846.11359.76820642.43710-0.836503.007601.97150HepG2RBM27
GCNT2ENSG00000111846.11996.88020662.583200.589203.790402.00380HepG2RBM47
GCNT2ENSG00000111846.11843.49320543.234000.634705.026602.30390HepG2RPL23A
GCNT2ENSG00000111846.11714.706201152.42260-0.689208.491307.39530HepG2RPLP0
GCNT2ENSG00000111846.11569.66740383.121400.572202.939902.13210HepG2RRP9
GCNT2ENSG00000111846.111267.67810504.867701.3281046.8480044.70130HepG2SAFB2
GCNT2ENSG00000111846.11585.70580429.271600.448202.837301.88650HepG2SERBP1
GCNT2ENSG00000111846.11955.45350668.933700.514204.433403.55930HepG2SF3B1
GCNT2ENSG00000111846.111020.27380676.977900.591709.547808.36900HepG2SLBP
GCNT2ENSG00000111846.11713.22180588.751500.276602.413901.80740HepG2SMN1
GCNT2ENSG00000111846.111513.87270593.957601.3497018.5086016.05470HepG2SMNDC1
GCNT2ENSG00000111846.11873.79800566.889600.624104.326402.29710HepG2SND1
GCNT2ENSG00000111846.111909.94180995.241700.9403031.7321030.51850HepG2SRFBP1
GCNT2ENSG00000111846.11824.44280477.922300.786508.276905.72640HepG2SRP68
GCNT2ENSG00000111846.112102.32980655.731601.6807042.6749041.30500HepG2SRSF1
GCNT2ENSG00000111846.11845.264101051.06050-0.314403.166002.42690HepG2SRSF7
GCNT2ENSG00000111846.111473.66250533.492901.4658036.0305034.46760HepG2SRSF9
GCNT2ENSG00000111846.111040.13950864.123100.267402.615402.11180HepG2SSB
GCNT2ENSG00000111846.11831.82930512.297400.699204.663303.09980HepG2STAU1
GCNT2ENSG00000111846.11940.20730544.271300.788605.634703.92930HepG2SUB1
GCNT2ENSG00000111846.11906.50280517.895800.8075011.8634010.04390HepG2SUPT6H
GCNT2ENSG00000111846.11857.55460589.462700.540706.315405.52750HepG2TAF15
GCNT2ENSG00000111846.111222.23180658.748600.8916012.8209011.43630HepG2TARDBP
GCNT2ENSG00000111846.11680.91800334.843801.0239011.540909.78290HepG2TFIP11
GCNT2ENSG00000111846.11938.29190541.566300.7928011.8201010.11920HepG2TIA1
GCNT2ENSG00000111846.11947.47040584.826900.696004.766702.86220HepG2TRA2A
GCNT2ENSG00000111846.111087.67920555.802100.9685016.1862014.97740HepG2TRIM56
GCNT2ENSG00000111846.11655.21450349.284400.907508.180305.72220HepG2TROVE2
GCNT2ENSG00000111846.11482.21380656.00570-0.444002.610001.99890HepG2U2AF1
GCNT2ENSG00000111846.1186.60900295.12210-1.768707.979506.69290HepG2UCHL5
GCNT2ENSG00000111846.111468.79620746.629500.9761029.4379027.66420HepG2UPF1
GCNT2ENSG00000111846.11904.11040457.590000.982309.753907.81020HepG2UPF2
GCNT2ENSG00000111846.11534.64640767.42270-0.521405.928604.44760HepG2UTP18
GCNT2ENSG00000111846.111069.67430720.839800.569308.993508.01400HepG2UTP3
GCNT2ENSG00000111846.11883.68230572.744500.625503.723202.24130HepG2XRCC5
GCNT2ENSG00000111846.113573.37720821.148002.12150213.32370210.73740HepG2ZNF622
GCNT2ENSG00000111846.1142.2633074.78790-0.823401.944001.39350K562AKAP8L
GCNT2ENSG00000111846.11118.3709043.969701.428605.624604.37010K562BOP1
GCNT2ENSG00000111846.11114.8730058.507600.973202.756901.69830K562CNOT7
GCNT2ENSG00000111846.1184.3833046.747400.852002.157201.45600K562CPSF6
GCNT2ENSG00000111846.1188.3466030.430801.537504.639603.25960K562EIF3D
GCNT2ENSG00000111846.1160.7898024.208101.328203.540702.61580K562EIF4A3
GCNT2ENSG00000111846.1158.4849023.088601.340803.196501.96820K562FKBP4
GCNT2ENSG00000111846.11110.1936047.574101.211704.346803.27460K562FMR1
GCNT2ENSG00000111846.1197.8353040.327601.278504.305403.14260K562FTO
GCNT2ENSG00000111846.1154.8094025.818101.085902.265801.63400K562G3BP2
GCNT2ENSG00000111846.1181.4980044.628200.868702.126401.42690K562GPKOW
GCNT2ENSG00000111846.1166.2177026.682201.311203.267702.62720K562HNRNPC
GCNT2ENSG00000111846.11110.3147056.208700.972702.868501.61100K562PABPC1
GCNT2ENSG00000111846.11140.6812088.520300.668202.454101.45460K562PUM1
GCNT2ENSG00000111846.11138.1844086.744000.671702.330101.44760K562PUM2
GCNT2ENSG00000111846.1141.1698072.26720-0.811801.841001.33960K562RBM15
GCNT2ENSG00000111846.1189.9649042.457701.083202.939001.93550K562SF3B1
GCNT2ENSG00000111846.1172.0997026.770201.429303.626302.44790K562SUPV3L1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GCNT2 is not available on ENCORE database.





1 RBPs can affect the splicing of GCNT2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGCNT2ENSG00000111846.11chr6+1052886310529074105277061052789310621583106216760.192000.006240.06324includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GCNT2 is not avaliable on ENCORE database.