FAM3A

General Information

Gene Name       : FAM3A
Gene ID             : ENSG00000071889.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FAM3A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FAM3AENSG00000071889.161.323.412.37ENCSR000AEF
HepG2FAM3AENSG00000071889.1612.062.897.48ENCSR985KAT
K562FAM3AENSG00000071889.1632.4716.3024.38ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FAM3A is not avaliable on ENCORE database.



Proteins bound to RNA
  • FAM3A RNA is bound by 10 proteins.  







eCLIP assay for FAM3A is not avaliable on ENCORE database.





10 proteins are bound to FAM3A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX153734732153734915-3'-UTR,intron-Distal,intron-Proximal4.558314.66439HepG2AKAP1
chrX153736930153736974-3'-UTR,intron-Distal,intron-Proximal4.637954.26208K562SF3B4
chrX153740076153740224-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.471798.86113K562AQR
chrX153736566153736621-3'-UTR,CDS,intron-Distal,intron-Proximal4.432625.47926K562AQR
chrX153734740153734871-3'-UTR,intron-Distal,intron-Proximal4.648525.64948HepG2UPF1
chrX153734769153734898-3'-UTR,intron-Distal,intron-Proximal3.2643710.29240K562UPF1
chrX153736630153736679-3'-UTR,CDS,intron-Distal,intron-Proximal4.312045.43239K562YBX3
chrX153734841153734929-3'-UTR,intron-Distal,intron-Proximal3.499635.55970K562YBX3
chrX153734718153734769-3'-UTR,intron-Distal,intron-Proximal3.913855.48330K562UPF1
chrX153734757153734835-3'-UTR,intron-Distal,intron-Proximal3.829715.63221K562METAP2
chrX153734552153734689-3'-UTR,intron-Distal4.9612113.75064K562UPF1
chrX153744459153744545-5'-UTR,intron-Distal,intron-Proximal5.169917.46114HepG2DDX3X
chrX153744237153744395-5'-UTR,intron-Distal,intron-Proximal3.825273.07786HepG2UPF1
chrX153744379153744548-5'-UTR,intron-Distal,intron-Proximal4.313174.61711HepG2NCBP2
chrX153744503153744519-5'-UTR,intron-Distal,intron-Proximal4.113217.45227K562RBM15
chrX153744235153744329-5'-UTR,intron-Distal,intron-Proximal3.834986.30673HepG2DDX3X
chrX153744470153744541-5'-UTR,intron-Distal,intron-Proximal4.418945.23852K562DDX3X
chrX153744387153744459-5'-UTR,intron-Distal,intron-Proximal3.548244.10374K562DDX3X
chrX153744480153744503-5'-UTR,intron-Distal,intron-Proximal5.080968.53052K562RBM15
chrX153741135153741146-intron-Distal,intron-Proximal4.077074.52312K562AQR
chrX153744007153744083-intron-Distal,intron-Proximal4.932624.48002K562AQR
chrX153741051153741127-intron-Distal,intron-Proximal4.125857.53394K562AQR
chrX153741066153741135-intron-Distal,intron-Proximal4.003713.56076K562BUD13
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FAM3A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FAM3A is not available on ENCORE database.

  • 95 RBPs can affect the levels of FAM3A.  








The Knockdown/knockout RNA-Seq assay for FAM3A is not available on ENCORE database.





95 RBPs can affect the gene expression of FAM3A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FAM3AENSG00000071889.12499.85400313.774200.671703.405502.25960HepG2AKAP8
FAM3AENSG00000071889.12460.04680360.483700.351702.328801.69000HepG2AUH
FAM3AENSG00000071889.12241.51760135.902700.829503.360902.37350HepG2BCLAF1
FAM3AENSG00000071889.12287.45540210.452900.449701.945501.43600HepG2BOP1
FAM3AENSG00000071889.12291.57990201.044400.536302.830002.18090HepG2CELF1
FAM3AENSG00000071889.12344.83540216.238000.673205.254204.27850HepG2DAZAP1
FAM3AENSG00000071889.12100.37840159.12660-0.664702.459801.60300HepG2DDX24
FAM3AENSG00000071889.12263.09860153.829800.774202.849202.06500HepG2DDX55
FAM3AENSG00000071889.12381.11260274.663700.472502.571701.59060HepG2DDX5
FAM3AENSG00000071889.12753.65530363.398001.052302.747902.13230HepG2DDX6
FAM3AENSG00000071889.12250.21750117.507001.090304.587403.70030HepG2DNAJC21
FAM3AENSG00000071889.12196.65540116.468500.755604.520803.72230HepG2DNAJC2
FAM3AENSG00000071889.12734.48560349.088201.0730010.008208.92080HepG2EIF2S1
FAM3AENSG00000071889.12620.68750385.660200.686402.953002.29210HepG2EIF4A3
FAM3AENSG00000071889.12377.76810204.314300.886606.494105.27030HepG2EIF4G2
FAM3AENSG00000071889.12235.53610146.387200.686103.748902.36830HepG2FAM120A
FAM3AENSG00000071889.12263.99620370.34030-0.488302.741601.95950HepG2FUBP3
FAM3AENSG00000071889.12388.37150218.999000.826405.312304.44330HepG2GPKOW
FAM3AENSG00000071889.12261.99820136.530300.940205.125603.21060HepG2HNRNPA0
FAM3AENSG00000071889.12192.72380118.632700.699902.949902.28460HepG2HNRNPA1
FAM3AENSG00000071889.12222.81630131.956700.755703.490702.71780HepG2HNRNPC
FAM3AENSG00000071889.12365.76600162.606701.1694013.7314012.29290HepG2HNRNPF
FAM3AENSG00000071889.12321.43090196.996300.706205.303604.39600HepG2HNRNPL
FAM3AENSG00000071889.12445.26790208.995901.091109.812808.70970HepG2HNRNPLL
FAM3AENSG00000071889.12216.77610131.084300.725604.405303.65540HepG2HNRNPU
FAM3AENSG00000071889.12352.62990160.121001.138904.183603.30900HepG2IGF2BP1
FAM3AENSG00000071889.12549.10290366.991700.581202.090301.49470HepG2IGF2BP2
FAM3AENSG00000071889.12243.03800133.898300.859906.661605.57330HepG2ILF2
FAM3AENSG00000071889.12296.29710157.194200.914404.857503.08700HepG2ILF3
FAM3AENSG00000071889.12250.59830153.821900.704003.259401.94220HepG2KHDRBS1
FAM3AENSG00000071889.12342.81200214.417700.676902.702501.94790HepG2NOL12
FAM3AENSG00000071889.12214.88220124.463800.787702.797201.33490HepG2NOLC1
FAM3AENSG00000071889.12279.65940185.323200.593502.719601.97690HepG2NSUN2
FAM3AENSG00000071889.12305.57660395.03260-0.370402.293301.73040HepG2PCBP1
FAM3AENSG00000071889.12235.67050116.916801.011207.559706.38570HepG2PPIL4
FAM3AENSG00000071889.12378.27560204.662100.886106.836905.95580HepG2PUF60
FAM3AENSG00000071889.12328.03540447.34030-0.447503.038202.47600HepG2NELFE
FAM3AENSG00000071889.12373.57700175.170101.092508.374007.28540HepG2RPLP0
FAM3AENSG00000071889.12299.47110124.990001.260505.439404.13920HepG2RPS10
FAM3AENSG00000071889.12296.25270162.918000.862604.744803.71170HepG2RPS2
FAM3AENSG00000071889.12324.53620162.081701.001606.240005.04430HepG2RPS3A
FAM3AENSG00000071889.12257.74990116.736501.1426010.111709.00000HepG2SAFB2
FAM3AENSG00000071889.12282.86320410.91360-0.538702.383801.75890HepG2SF3A3
FAM3AENSG00000071889.12374.88930206.857900.857706.362505.32960HepG2SF3B1
FAM3AENSG00000071889.12378.10250196.195100.946409.770608.57780HepG2SLBP
FAM3AENSG00000071889.12198.59360136.134800.544702.513001.89560HepG2SMN1
FAM3AENSG00000071889.12238.99940130.037100.878004.022502.84990HepG2SMNDC1
FAM3AENSG00000071889.12225.16270124.101700.859303.425901.63710HepG2SND1
FAM3AENSG00000071889.12130.55520436.81630-1.7424026.2819025.14910HepG2SRSF1
FAM3AENSG00000071889.12304.28900159.756400.929508.250707.15840HepG2SRSF7
FAM3AENSG00000071889.12571.32950339.233800.751909.532508.69160HepG2SSB
FAM3AENSG00000071889.12230.78500141.064700.710102.545401.49650HepG2STIP1
FAM3AENSG00000071889.12310.56480229.806600.434402.151801.59040HepG2SUCLG1
FAM3AENSG00000071889.12487.87940247.619100.9783010.149508.45310HepG2SUPT6H
FAM3AENSG00000071889.12144.31810392.60590-1.4438018.5874017.31990HepG2TAF15
FAM3AENSG00000071889.12291.93950203.737000.518902.387201.70640HepG2TARDBP
FAM3AENSG00000071889.12365.59800127.374001.5211018.3645017.28530HepG2TIAL1
FAM3AENSG00000071889.12328.27650128.511401.3529016.6383015.41030HepG2TRIM56
FAM3AENSG00000071889.12411.21080211.579900.958602.244101.49480HepG2UBE2L3
FAM3AENSG00000071889.12453.71740364.417700.316101.989401.38070HepG2UPF1
FAM3AENSG00000071889.12217.32610351.83070-0.695005.516204.71900HepG2UTP3
FAM3AENSG00000071889.12334.89440145.188601.205704.744003.29260HepG2XPO5
FAM3AENSG00000071889.12280.19490150.720300.894504.052303.18250HepG2XRN2
FAM3AENSG00000071889.12281.09410208.439100.431302.248301.63430HepG2ZC3H8
FAM3AENSG00000071889.12599.69640400.789500.581307.095906.32530HepG2ZNF622
FAM3AENSG00000071889.121381.254001086.032800.346804.386303.70060K562AGGF1
FAM3AENSG00000071889.12936.63590748.616500.323202.938201.38340K562AKAP1
FAM3AENSG00000071889.121599.866401193.415300.422802.641001.68700K562AKAP8
FAM3AENSG00000071889.121509.770201130.073600.417804.070203.27670K562AKAP8L
FAM3AENSG00000071889.121469.078401185.732900.309003.332402.32240K562ATP5C1
FAM3AENSG00000071889.12877.48440599.724900.549007.081205.51540K562BCLAF1
FAM3AENSG00000071889.12847.94240630.238500.428003.213802.05910K562CCAR1
FAM3AENSG00000071889.121661.438201297.845300.356203.868902.44420K562CCDC124
FAM3AENSG00000071889.12685.00490454.980700.590202.485901.49150K562CSTF2
FAM3AENSG00000071889.121399.507901093.114100.356404.149502.64910K562DDX21
FAM3AENSG00000071889.121035.79260758.482200.449404.320302.97500K562DDX3X
FAM3AENSG00000071889.121129.73480917.513300.300102.733302.01790K562EIF2S2
FAM3AENSG00000071889.12907.46610713.566000.346703.076001.83990K562EIF4B
FAM3AENSG00000071889.12914.75430653.697900.484704.158703.10620K562FIP1L1
FAM3AENSG00000071889.12415.74640586.83630-0.497303.289602.35230K562FMR1
FAM3AENSG00000071889.12102.93410239.47350-1.218104.625903.65900K562G3BP2
FAM3AENSG00000071889.12781.76150550.574200.505704.193403.22130K562GPKOW
FAM3AENSG00000071889.121773.637101222.559400.536706.579305.40850K562GRSF1
FAM3AENSG00000071889.12749.01400407.802700.877004.187502.81380K562IGF2BP2
FAM3AENSG00000071889.12606.00510414.623800.547402.597901.45560K562IGF2BP3
FAM3AENSG00000071889.12610.22920428.172000.511102.183001.43180K562MAGOH
FAM3AENSG00000071889.12685.40750427.240600.681802.173401.36530K562MATR3
FAM3AENSG00000071889.12613.93520791.29700-0.366102.898701.64150K562NCBP2
FAM3AENSG00000071889.121142.30700742.117400.622106.787605.40320K562PPIG
FAM3AENSG00000071889.12719.06880416.026700.789408.350407.23790K562PTBP1
FAM3AENSG00000071889.121389.795201867.36360-0.426103.074501.94900K562PUM1
FAM3AENSG00000071889.121367.639701091.968100.324703.352102.70910K562RBM15
FAM3AENSG00000071889.12893.43960710.395200.330602.289201.31110K562SAFB
FAM3AENSG00000071889.12518.85100248.729501.0606013.9146011.88560K562SF3B4
FAM3AENSG00000071889.12192.85890289.32880-0.585203.056501.37670K562SND1
FAM3AENSG00000071889.12748.38110533.787600.487402.567101.58990K562SRFBP1
FAM3AENSG00000071889.12652.06780440.300500.566404.585403.17070K562SRSF4
FAM3AENSG00000071889.12688.20660385.337200.836609.254407.22470K562SRSF5
FAM3AENSG00000071889.12968.13580412.712701.230009.172807.77990K562TARDBP
FAM3AENSG00000071889.12785.75980398.134200.9807011.021309.26830K562TIA1
FAM3AENSG00000071889.12659.82780390.924400.755104.847803.32590K562TRA2A
FAM3AENSG00000071889.12855.43650630.630900.439803.434802.35920K562TRIM56
FAM3AENSG00000071889.121695.139801395.523100.280503.623202.80890K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FAM3A is not available on ENCORE database.





17 RBPs can affect the splicing of FAM3A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFAM3AENSG00000071889.12chrX-153736141153736192153735736153735821153736619153736678-0.311000.000300.06248excludedK562FTO
SEFAM3AENSG00000071889.12chrX-153740637153740735153740180153740204153741146153741260-0.463000.002960.04947excludedK562SF3B4
SEFAM3AENSG00000071889.12chrX-153740637153740735153740180153740204153741146153741260-0.764000.002210.03951excludedHepG2U2AF1
SEFAM3AENSG00000071889.12chrX-153736141153736192153735736153735821153736619153736678-0.117000.002810.06854excludedK562AKAP8L
SEFAM3AENSG00000071889.12chrX-153736141153736192153735736153735821153736619153736678-0.199000.000000.00000excludedK562AQR
SEFAM3AENSG00000071889.12chrX-1537361411537361921537357361537358211537366191537366780.133000.001310.08344includedHepG2DDX3X
SEFAM3AENSG00000071889.12chrX-153736141153736192153735736153735821153736619153736678-0.140000.000610.09883excludedK562HNRNPA1
SEFAM3AENSG00000071889.12chrX-153736141153736192153735736153735821153736619153736678-0.160000.000320.07740excludedK562PPIL4
SEFAM3AENSG00000071889.12chrX-1537361411537361921537357361537358211537366191537366780.386000.000280.03324includedHepG2SUPV3L1
SEFAM3AENSG00000071889.12chrX-153740637153740735153740180153740204153741146153741260-0.200000.002020.06442excludedK562HNRNPU
SEFAM3AENSG00000071889.12chrX-153740637153740735153740180153740204153741146153741260-0.251000.000530.01674excludedK562AGGF1
SEFAM3AENSG00000071889.12chrX-153736141153736192153735736153735821153736619153736678-0.322000.000200.01165excludedK562SF3B1
SEFAM3AENSG00000071889.12chrX-153740637153740735153740180153740204153741146153741260-0.303000.003220.09543excludedK562PTBP1
SEFAM3AENSG00000071889.12chrX-1537406371537407551537402001537402041537411461537412600.284000.006890.08892includedK562HNRNPC
SEFAM3AENSG00000071889.12chrX-153736141153736192153735736153735821153736619153736678-0.243000.000010.00048excludedK562HNRNPC
A3SSFAM3AENSG00000071889.12chrX-1537368041537371421537368041537369281537401801537402240.057000.001680.01106longerK562AQR
MXEFAM3AENSG00000071889.12chrX-1537368041537369281537401801537402041537366191537366781537411461537412600.224000.002780.037001includedK562DROSHA
MXEFAM3AENSG00000071889.12chrX-153736804153736928153740180153740204153736619153736678153741146153741260-0.434000.000010.000842includedK562XRN2
MXEFAM3AENSG00000071889.12chrX-1537366191537366781537368041537371421537361411537361921537401801537402040.210000.000720.033261includedK562FXR1
MXEFAM3AENSG00000071889.12chrX-1537361411537361921537366191537366781537357361537358211537368041537369280.117000.017510.098921includedK562AQR
MXEFAM3AENSG00000071889.12chrX-1537361411537361921537366191537367261537357361537358211537368041537369280.184000.000010.000521includedK562HNRNPC
MXEFAM3AENSG00000071889.12chrX-1537368041537369281537401801537402041537366191537366781537411461537412600.465000.000890.029411includedK562PPIL4
MXEFAM3AENSG00000071889.12chrX-1537361411537361921537366191537366781537357361537358211537368041537369280.144000.002340.076421includedK562AKAP8L
MXEFAM3AENSG00000071889.12chrX-1537361411537361921537366191537367261537357361537358211537368041537369280.094000.002220.073271includedK562AKAP8L
MXEFAM3AENSG00000071889.12chrX-1537361411537362131537366191537366781537357361537358211537368041537369280.256000.002780.052911includedK562SUPV3L1
MXEFAM3AENSG00000071889.12chrX-153736804153736928153740180153740204153736619153736678153741146153741260-0.319000.003650.064982includedK562SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FAM3A is not avaliable on ENCORE database.