EPB41L4A-AS1

General Information

Gene Name       : EPB41L4A-AS1
Gene ID             : ENSG00000224032.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: EPB41L4A-AS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878EPB41L4A-AS1ENSG00000224032.66.587.837.21ENCSR000AEF
HepG2EPB41L4A-AS1ENSG00000224032.613.038.9611.00ENCSR985KAT
K562EPB41L4A-AS1ENSG00000224032.615.399.2012.29ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for EPB41L4A-AS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • EPB41L4A-AS1 RNA is bound by 13 proteins.  







eCLIP assay for EPB41L4A-AS1 is not avaliable on ENCORE database.





13 proteins are bound to EPB41L4A-AS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5111497290111497306+intron-Distal,intron-Proximal3.90438400.00000K562AATF
chr5111497498111497609+intron-Distal,intron-Proximal5.1395917.14889K562AQR
chr5111497256111497266+intron-Distal3.68559400.00000K562AATF
chr5111497185111497199+intron-Distal5.74571400.00000HepG2DKC1
chr5111496967111497039+intron-Distal,intron-Proximal5.233478.44604HepG2PRPF8
chr5111497273111497289+intron-Distal5.83363400.00000HepG2NOLC1
chr5111497221111497239+intron-Distal6.61109400.00000HepG2DKC1
chr5111497274111497316+intron-Distal,intron-Proximal5.75703400.00000HepG2DKC1
chr5111497210111497315+intron-Distal,intron-Proximal3.4928918.84336K562NIPBL
chr5111497256111497259+intron-Distal3.4617120.04923K562SMNDC1
chr5111497179111497219+intron-Distal4.19086400.00000HepG2NOLC1
chr5111497251111497257+intron-Distal5.36310400.00000HepG2NOLC1
chr5111497392111497487+intron-Distal,intron-Proximal3.843604.68902HepG2PPIG
chr5111497268111497274+intron-Distal3.0848119.07899K562SMNDC1
chr5111497278111497315+intron-Distal,intron-Proximal3.1364460.01482K562DDX21
chr5111497259111497268+intron-Distal3.2809423.66214K562SMNDC1
chr5111497252111497258+intron-Distal7.27975400.00000HepG2DKC1
chr5111497005111497110+intron-Distal,intron-Proximal4.069055.99968K562PRPF8
chr5111497311111497315+intron-Distal,intron-Proximal5.17266400.00000K562SMNDC1
chr5111497306111497311+intron-Distal,intron-Proximal6.52653400.00000HepG2NOLC1
chr5111497378111497459+intron-Distal,intron-Proximal4.1379114.93802K562AQR
chr5111497238111497251+intron-Distal5.30197400.00000HepG2NOLC1
chr5111497284111497304+intron-Distal,intron-Proximal4.55912400.00000K562SMNDC1
chr5111497274111497284+intron-Distal4.03594400.00000K562SMNDC1
chr5111496854111496909+intron-Distal4.244678.04249HepG2SUB1
chr5111497306111497315+intron-Distal,intron-Proximal3.7543465.39941K562AATF
chr5111497188111497231+intron-Distal3.7320864.79352K562AATF
chr5111497199111497221+intron-Distal5.99671400.00000HepG2DKC1
chr5111496991111496996+intron-Distal,intron-Proximal5.3854116.58923K562AQR
chr5111497231111497256+intron-Distal4.2141584.44210K562AATF
chr5111497258111497265+intron-Distal5.84838400.00000HepG2DKC1
chr5111497368111497488+intron-Distal,intron-Proximal4.4286715.08919HepG2AQR
chr5111497270111497290+intron-Distal3.89201400.00000K562AATF
chr5111497311111497315+intron-Distal,intron-Proximal6.17645400.00000HepG2NOLC1
chr5111497304111497311+intron-Distal,intron-Proximal4.60433400.00000K562SMNDC1
chr5111496996111497027+intron-Distal,intron-Proximal6.5903119.40391K562AQR
chr5111497456111497502+intron-Distal,intron-Proximal4.985296.69228HepG2PRPF8
chr5111497250111497256+intron-Distal3.6452322.31852K562SMNDC1
chr5111497273111497315+intron-Distal,intron-Proximal3.1489346.06476K562HNRNPUL1
chr5111497289111497306+intron-Distal,intron-Proximal5.99105400.00000HepG2NOLC1
chr5111497265111497274+intron-Distal5.72399400.00000HepG2DKC1
chr5111496801111496828+intron-Distal4.485546.71581HepG2SUB1
chr5111497236111497250+intron-Distal3.5957120.63186K562SMNDC1
chr5111497244111497251+intron-Distal7.14230400.00000HepG2DKC1
chr5111497257111497312+intron-Distal,intron-Proximal4.7948915.76281HepG2LARP7
chr5111497363111497438+intron-Distal,intron-Proximal5.3804213.66786HepG2BUD13
chr5111497257111497273+intron-Distal5.43025400.00000HepG2NOLC1
chr5111497027111497035+intron-Distal,intron-Proximal6.4769218.17544K562AQR
chr5111497219111497238+intron-Distal4.68133400.00000HepG2NOLC1
chr5111496991111497033+intron-Distal,intron-Proximal5.6843410.58731HepG2AQR
chr5111497180111497185+intron-Distal5.50603400.00000HepG2DKC1
chr5111497838111497877+intron-Proximal3.407393.99908K562BUD13
chr5111497817111497866+intron-Proximal5.496608.43521K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for EPB41L4A-AS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for EPB41L4A-AS1 is not available on ENCORE database.

  • 72 RBPs can affect the levels of EPB41L4A-AS1.  








The Knockdown/knockout RNA-Seq assay for EPB41L4A-AS1 is not available on ENCORE database.





72 RBPs can affect the gene expression of EPB41L4A-AS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
EPB41L4A-AS1ENSG00000224032.2172.38600374.90250-1.120907.879207.03200HepG2AKAP1
EPB41L4A-AS1ENSG00000224032.2113.13380178.47880-0.657702.501801.50930HepG2AKAP8
EPB41L4A-AS1ENSG00000224032.2247.92610377.70640-0.607404.518503.67790HepG2AUH
EPB41L4A-AS1ENSG00000224032.2123.11010191.41320-0.636702.593202.01130HepG2BOP1
EPB41L4A-AS1ENSG00000224032.296.87050167.74490-0.792102.740501.51390HepG2BUD13
EPB41L4A-AS1ENSG00000224032.2160.82710319.34710-0.989605.298804.23790HepG2CNOT7
EPB41L4A-AS1ENSG00000224032.2271.88200190.800300.510803.220602.32550HepG2DDX19B
EPB41L4A-AS1ENSG00000224032.2173.35450308.47370-0.831404.688603.90270HepG2DDX6
EPB41L4A-AS1ENSG00000224032.2191.11320296.58210-0.634003.008702.39110HepG2EIF2S1
EPB41L4A-AS1ENSG00000224032.2566.02310433.638300.384303.237302.59560HepG2ETF1
EPB41L4A-AS1ENSG00000224032.2279.76430177.577700.655703.485601.54070HepG2EXOSC9
EPB41L4A-AS1ENSG00000224032.2227.73800330.65630-0.538002.541701.87730HepG2FXR1
EPB41L4A-AS1ENSG00000224032.2178.10180306.76210-0.784404.535803.69320HepG2G3BP1
EPB41L4A-AS1ENSG00000224032.2189.80310270.54820-0.511403.129802.37070HepG2HNRNPF
EPB41L4A-AS1ENSG00000224032.2242.68920158.782700.612003.528702.85260HepG2HNRNPU
EPB41L4A-AS1ENSG00000224032.2167.72040266.40960-0.667602.200301.54970HepG2IGF2BP1
EPB41L4A-AS1ENSG00000224032.2208.76690311.82760-0.578902.806602.12700HepG2IGF2BP2
EPB41L4A-AS1ENSG00000224032.2191.33630332.63200-0.797804.410503.63050HepG2MATR3
EPB41L4A-AS1ENSG00000224032.2217.59130340.47490-0.645903.453702.74980HepG2NCBP2
EPB41L4A-AS1ENSG00000224032.2251.05810157.167300.675604.098403.08920HepG2PARN
EPB41L4A-AS1ENSG00000224032.2203.13360141.621400.520302.371001.68390HepG2PPIL4
EPB41L4A-AS1ENSG00000224032.2243.11800174.623400.477302.456801.72310HepG2PRPF4
EPB41L4A-AS1ENSG00000224032.2219.63900297.43400-0.437402.381201.86730HepG2PTBP1
EPB41L4A-AS1ENSG00000224032.2438.03870289.043700.599705.918905.11850HepG2PUM1
EPB41L4A-AS1ENSG00000224032.2390.84520288.829800.436302.554501.90960HepG2PUM2
EPB41L4A-AS1ENSG00000224032.2196.84140322.16660-0.710804.893204.09840HepG2QKI
EPB41L4A-AS1ENSG00000224032.2387.83490240.552800.689003.664902.51620HepG2RBM27
EPB41L4A-AS1ENSG00000224032.2196.79040331.03040-0.750305.546004.82260HepG2NELFE
EPB41L4A-AS1ENSG00000224032.2173.89980291.49440-0.745204.643103.78910HepG2RPLP0
EPB41L4A-AS1ENSG00000224032.2198.28280320.75380-0.693903.447302.55430HepG2RPS3A
EPB41L4A-AS1ENSG00000224032.2352.04420252.865300.477302.181101.58170HepG2SF3A3
EPB41L4A-AS1ENSG00000224032.2238.64900323.24600-0.437702.378301.93080HepG2SRSF1
EPB41L4A-AS1ENSG00000224032.2319.47330193.629400.722304.063002.53010HepG2SSRP1
EPB41L4A-AS1ENSG00000224032.2183.73890246.63530-0.424702.144501.64550HepG2ZNF622
EPB41L4A-AS1ENSG00000224032.2826.02980550.948900.584207.272606.41610K562AGGF1
EPB41L4A-AS1ENSG00000224032.21738.03980690.928901.3308028.9358027.24140K562AQR
EPB41L4A-AS1ENSG00000224032.2507.43590658.44710-0.375802.908001.69550K562CCDC124
EPB41L4A-AS1ENSG00000224032.21215.28200862.241700.495005.833704.41960K562CELF1
EPB41L4A-AS1ENSG00000224032.2253.38940160.575300.658003.356501.86770K562DNAJC21
EPB41L4A-AS1ENSG00000224032.2230.85890354.66450-0.619402.869201.56370K562EEF2
EPB41L4A-AS1ENSG00000224032.2406.59540518.91860-0.351902.323901.65630K562EIF2S2
EPB41L4A-AS1ENSG00000224032.2878.45690394.645601.1543013.4614011.59200K562EIF4A3
EPB41L4A-AS1ENSG00000224032.2908.30300701.349400.372903.663702.58380K562EIF4G2
EPB41L4A-AS1ENSG00000224032.2488.08540322.854700.596103.333202.54370K562G3BP2
EPB41L4A-AS1ENSG00000224032.2516.93870343.549900.589403.836402.11800K562GEMIN5
EPB41L4A-AS1ENSG00000224032.2461.96560355.143800.379302.449101.38130K562GLRX3
EPB41L4A-AS1ENSG00000224032.2701.39010425.774300.720008.175806.41290K562HNRNPA1
EPB41L4A-AS1ENSG00000224032.2508.05350277.207700.873908.421107.43020K562HNRNPC
EPB41L4A-AS1ENSG00000224032.2686.40510467.758400.553204.981103.52030K562HNRNPL
EPB41L4A-AS1ENSG00000224032.2691.55620471.489200.552504.518303.36950K562HNRNPU
EPB41L4A-AS1ENSG00000224032.2610.26780384.197000.667506.671905.33930K562MAGOH
EPB41L4A-AS1ENSG00000224032.21007.04670747.588200.429703.619902.32770K562MSI2
EPB41L4A-AS1ENSG00000224032.2601.71650373.389100.688303.212902.34170K562MTPAP
EPB41L4A-AS1ENSG00000224032.21163.60510767.112600.601006.654804.30630K562NOL12
EPB41L4A-AS1ENSG00000224032.2615.44690414.859200.568906.710305.61530K562NSUN2
EPB41L4A-AS1ENSG00000224032.2422.09950272.918500.629004.134002.22810K562NUSAP1
EPB41L4A-AS1ENSG00000224032.2225.03450362.16610-0.686504.063103.05480K562PCBP3
EPB41L4A-AS1ENSG00000224032.2706.83020466.536500.599304.688702.56170K562PKM
EPB41L4A-AS1ENSG00000224032.2947.18800720.651200.394203.340701.76230K562PNPT1
EPB41L4A-AS1ENSG00000224032.2176.61780277.78970-0.653403.929502.96810K562POLR2G
EPB41L4A-AS1ENSG00000224032.2346.38310248.542300.478802.530501.67180K562PSIP1
EPB41L4A-AS1ENSG00000224032.2487.63330373.259000.385502.474201.84040K562PTBP1
EPB41L4A-AS1ENSG00000224032.21168.73840813.842400.522006.533504.82980K562PUM1
EPB41L4A-AS1ENSG00000224032.2931.78610568.606100.712506.536005.74210K562PUS1
EPB41L4A-AS1ENSG00000224032.2481.21700358.002100.426602.616801.80110K562RBM22
EPB41L4A-AS1ENSG00000224032.2268.58050376.71860-0.488102.703001.62470K562NELFE
EPB41L4A-AS1ENSG00000224032.2215.00480339.65570-0.659703.551502.62360K562RPS19
EPB41L4A-AS1ENSG00000224032.2210.75870397.25190-0.914506.353104.75520K562RPS3
EPB41L4A-AS1ENSG00000224032.2629.18180409.374500.620006.794005.56460K562SF3A3
EPB41L4A-AS1ENSG00000224032.2456.87860335.788000.444203.141202.22930K562SF3B4
EPB41L4A-AS1ENSG00000224032.2271.46350365.89950-0.430702.305401.65250K562SRSF1
EPB41L4A-AS1ENSG00000224032.2478.58320329.704200.537504.572102.86850K562SSB
EPB41L4A-AS1ENSG00000224032.2462.53050322.844600.518602.864401.82970K562SUPV3L1
EPB41L4A-AS1ENSG00000224032.2473.39000313.036500.596603.684402.38300K562U2AF1
EPB41L4A-AS1ENSG00000224032.2476.58780323.270700.559904.537903.51550K562U2AF2
EPB41L4A-AS1ENSG00000224032.2730.24810439.884700.7312010.737509.43910K562UPF1
EPB41L4A-AS1ENSG00000224032.2585.91920302.564900.953405.292102.93320K562XRCC6
EPB41L4A-AS1ENSG00000224032.21087.14280778.460700.481703.218902.27960K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for EPB41L4A-AS1 is not available on ENCORE database.





1 RBPs can affect the splicing of EPB41L4A-AS1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEEPB41L4A-AS1ENSG00000224032.2chr5+111497361111497472111496222111496992111497847111499973-0.054000.011100.08821excludedK562AQR
A3SSEPB41L4A-AS1ENSG00000224032.2chr5+1114973781114974721114973991114974721114969451114969920.248000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for EPB41L4A-AS1 is not avaliable on ENCORE database.