COL17A1

General Information

Gene Name       : COL17A1
Gene ID             : ENSG00000065618.19
Essential Gene : No

Functions

Localization

Domains (AlphaFold: COL17A1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878COL17A1ENSG00000065618.190.000.000.00ENCSR000AEF
HepG2COL17A1ENSG00000065618.190.000.000.00ENCSR985KAT
K562COL17A1ENSG00000065618.190.000.020.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for COL17A1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on COL17A1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for COL17A1 is not avaliable on ENCORE database.






NO known proteins are bound to COL17A1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for COL17A1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for COL17A1 is not available on ENCORE database.

  • 30 RBPs can affect the levels of COL17A1.  








The Knockdown/knockout RNA-Seq assay for COL17A1 is not available on ENCORE database.





30 RBPs can affect the gene expression of COL17A1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
COL17A1ENSG00000065618.1228.473006.618002.105003.072502.44550HepG2BOP1
COL17A1ENSG00000065618.120.4470013.39110-4.904703.360502.51170HepG2CNOT7
COL17A1ENSG00000065618.1225.710503.515902.870303.573302.87310HepG2DDX3X
COL17A1ENSG00000065618.1230.1918010.167601.570102.104801.42060HepG2DDX55
COL17A1ENSG00000065618.125.6957020.30870-1.834201.928901.34810HepG2DKC1
COL17A1ENSG00000065618.123.7551023.17840-2.625903.101202.47060HepG2ETF1
COL17A1ENSG00000065618.1259.2797017.965201.722203.688402.80780HepG2FIP1L1
COL17A1ENSG00000065618.1220.107903.233902.636302.755402.06540HepG2FXR1
COL17A1ENSG00000065618.1251.1691016.684901.616603.263002.15230HepG2GNB2L1
COL17A1ENSG00000065618.1222.060202.861202.946602.534201.59720HepG2IGF2BP3
COL17A1ENSG00000065618.1220.987000.436705.586505.474304.75940HepG2PTBP1
COL17A1ENSG00000065618.1232.497609.034701.846702.457301.79110HepG2RAVER1
COL17A1ENSG00000065618.12416.1257019.373204.4248032.7639031.36950HepG2RBM22
COL17A1ENSG00000065618.1229.216700.486405.908306.962106.17230HepG2NELFE
COL17A1ENSG00000065618.1214.813600.452305.033403.467302.78710HepG2RECQL
COL17A1ENSG00000065618.1250.4302011.638502.115304.945304.06700HepG2RPLP0
COL17A1ENSG00000065618.1265.589007.074303.212707.797006.82760HepG2RPS19
COL17A1ENSG00000065618.1253.3557018.189001.552502.628801.84700HepG2RPS2
COL17A1ENSG00000065618.1262.525907.774503.007508.456807.18120HepG2RRP9
COL17A1ENSG00000065618.123.7270018.85170-2.338602.363201.74100HepG2SF3A3
COL17A1ENSG00000065618.1214.251500.455604.967203.274302.63720HepG2SF3B4
COL17A1ENSG00000065618.1234.086708.839501.947103.169601.45300HepG2SLTM
COL17A1ENSG00000065618.1223.055007.577401.605201.888901.33990HepG2SMN1
COL17A1ENSG00000065618.12172.4200021.881902.9780024.7806023.67150HepG2SRFBP1
COL17A1ENSG00000065618.1211.313300.475204.573302.371901.92490HepG2SRSF1
COL17A1ENSG00000065618.1290.179507.001203.687003.111902.04120HepG2SRSF3
COL17A1ENSG00000065618.122.1017018.99970-3.176303.390702.83590HepG2SSB
COL17A1ENSG00000065618.1241.8645012.302801.766603.419602.74210HepG2SUCLG1
COL17A1ENSG00000065618.1269.582207.091103.2945011.9401011.02910HepG2TIAL1
COL17A1ENSG00000065618.122.5741016.71830-2.699302.588101.90900HepG2UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for COL17A1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of COL17A1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for COL17A1 is not avaliable on ENCORE database.