CHCHD4

General Information

Gene Name       : CHCHD4
Gene ID             : ENSG00000163528.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CHCHD4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CHCHD4ENSG00000163528.1224.2323.7824.01ENCSR000AEF
HepG2CHCHD4ENSG00000163528.1217.7323.4220.58ENCSR985KAT
K562CHCHD4ENSG00000163528.1264.3270.8367.57ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CHCHD4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CHCHD4 RNA is bound by 6 proteins.  







eCLIP assay for CHCHD4 is not avaliable on ENCORE database.





6 proteins are bound to CHCHD4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr31415369914153717-3'-UTR,intron-Distal5.155847.83423K562YBX3
chr31415403814154134-3'-UTR,intron-Distal3.434775.32768K562YBX3
chr31415432614154455-3'-UTR,CDS,intron-Distal3.033804.19577K562UCHL5
chr31415792214158025-3'-UTR,CDS,intron-Distal,intron-Proximal3.348843.85473K562GRWD1
chr31415371714153742-3'-UTR,intron-Distal3.498475.56979K562YBX3
chr31415392914153985-3'-UTR,intron-Distal3.975376.26940K562FAM120A
chr31416615414166271-5'-UTR,CDS,intron-Distal,intron-Proximal4.3412418.21461K562DDX3X
chr31415441314154482-CDS,intron-Distal3.018173.84771K562ZNF622
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CHCHD4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CHCHD4 is not available on ENCORE database.

  • 85 RBPs can affect the levels of CHCHD4.  








The Knockdown/knockout RNA-Seq assay for CHCHD4 is not available on ENCORE database.





85 RBPs can affect the gene expression of CHCHD4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CHCHD4ENSG00000163528.8359.85180553.00770-0.619903.034102.48000HepG2AKAP1
CHCHD4ENSG00000163528.8208.92290283.30340-0.439402.369001.65340HepG2AKAP8L
CHCHD4ENSG00000163528.8374.71700481.02310-0.360302.382701.73710HepG2AUH
CHCHD4ENSG00000163528.8202.57970376.03700-0.892406.940706.04070HepG2BOP1
CHCHD4ENSG00000163528.8191.95620284.37940-0.567002.058501.40440HepG2CNOT7
CHCHD4ENSG00000163528.8238.39400345.21540-0.534102.770702.08330HepG2CPSF6
CHCHD4ENSG00000163528.8314.75080404.34780-0.361402.065501.49610HepG2CELF1
CHCHD4ENSG00000163528.8360.34230529.79720-0.556102.621002.01070HepG2DDX3X
CHCHD4ENSG00000163528.8313.14050454.97100-0.539002.528801.93700HepG2DDX6
CHCHD4ENSG00000163528.8220.84360437.50940-0.986305.857805.01200HepG2EIF2S1
CHCHD4ENSG00000163528.8321.34280483.56450-0.589602.770402.13040HepG2EIF4A3
CHCHD4ENSG00000163528.8231.09960470.69350-1.026306.317105.30840HepG2EIF4B
CHCHD4ENSG00000163528.8308.10430552.30240-0.8420010.451909.40440HepG2ETF1
CHCHD4ENSG00000163528.8171.56310275.54260-0.683504.105203.08870HepG2EWSR1
CHCHD4ENSG00000163528.8271.04680389.61540-0.523502.163701.47870HepG2FIP1L1
CHCHD4ENSG00000163528.8214.81780326.05100-0.602002.716901.60970HepG2FUS
CHCHD4ENSG00000163528.8321.67570487.69910-0.600403.098902.36670HepG2FXR1
CHCHD4ENSG00000163528.8200.67700452.51620-1.173107.313106.25610HepG2G3BP1
CHCHD4ENSG00000163528.8118.91350202.14730-0.765503.326902.33450HepG2GEMIN5
CHCHD4ENSG00000163528.8211.70150391.30910-0.886306.067505.14540HepG2GPKOW
CHCHD4ENSG00000163528.8170.43340275.46450-0.692703.550602.77300HepG2HNRNPC
CHCHD4ENSG00000163528.8288.93830457.97150-0.664503.864103.05080HepG2HNRNPK
CHCHD4ENSG00000163528.8270.91970373.43520-0.463002.195801.62850HepG2HNRNPLL
CHCHD4ENSG00000163528.8199.30170273.64330-0.457302.532201.95200HepG2HNRNPU
CHCHD4ENSG00000163528.8228.92890460.00970-1.006805.860404.91430HepG2IGF2BP2
CHCHD4ENSG00000163528.8349.12560490.63110-0.490902.175701.61270HepG2MATR3
CHCHD4ENSG00000163528.8199.41820502.21430-1.332508.942407.84150HepG2NCBP2
CHCHD4ENSG00000163528.8269.90270447.37440-0.729003.793802.95810HepG2PABPC4
CHCHD4ENSG00000163528.8327.63630438.97260-0.422003.031102.40040HepG2PCBP1
CHCHD4ENSG00000163528.8182.19970281.39060-0.627104.051603.13500HepG2PRPF4
CHCHD4ENSG00000163528.8216.32990324.47700-0.584902.453301.30250HepG2PRPF6
CHCHD4ENSG00000163528.8126.58360209.95450-0.730002.969102.13430HepG2PRPF8
CHCHD4ENSG00000163528.8212.86600446.65680-1.0692013.7327012.69660HepG2PTBP1
CHCHD4ENSG00000163528.8294.14970411.53120-0.484502.828502.22640HepG2PUF60
CHCHD4ENSG00000163528.8206.10960287.22090-0.478702.825802.20560HepG2PUS1
CHCHD4ENSG00000163528.8277.67690483.77070-0.800907.865006.89390HepG2QKI
CHCHD4ENSG00000163528.8279.56150461.61770-0.723506.650305.93020HepG2RBM22
CHCHD4ENSG00000163528.8236.14220439.04150-0.894708.420707.29390HepG2RBM25
CHCHD4ENSG00000163528.8299.71090497.09790-0.730007.305706.49950HepG2NELFE
CHCHD4ENSG00000163528.8329.37980462.95770-0.491103.777703.07260HepG2RECQL
CHCHD4ENSG00000163528.8120.71060207.68960-0.782903.144702.31450HepG2RRP9
CHCHD4ENSG00000163528.8173.08370324.04830-0.904704.719002.71530HepG2RTF1
CHCHD4ENSG00000163528.8200.67400316.91240-0.659202.135501.54180HepG2SF3A3
CHCHD4ENSG00000163528.8278.56110369.61590-0.408001.978501.37600HepG2SF3B1
CHCHD4ENSG00000163528.8302.71720465.05290-0.619405.508604.72280HepG2SF3B4
CHCHD4ENSG00000163528.8300.38160521.37160-0.795509.332708.56240HepG2SRFBP1
CHCHD4ENSG00000163528.8337.16520485.40410-0.525704.392803.83040HepG2SRSF1
CHCHD4ENSG00000163528.8315.76070406.33380-0.363802.134701.57610HepG2SRSF5
CHCHD4ENSG00000163528.8248.76480353.41560-0.506603.414502.65280HepG2SRSF7
CHCHD4ENSG00000163528.8287.25290394.89310-0.459103.352802.75720HepG2SRSF9
CHCHD4ENSG00000163528.8184.81260270.92640-0.551801.988601.40140HepG2SUPV3L1
CHCHD4ENSG00000163528.8318.84570436.27120-0.452403.097602.50880HepG2TAF15
CHCHD4ENSG00000163528.8245.70680364.03530-0.567103.181402.40970HepG2TARDBP
CHCHD4ENSG00000163528.8280.07870425.57780-0.603602.959702.09580HepG2UBE2L3
CHCHD4ENSG00000163528.8219.62970327.56930-0.576702.571701.55360HepG2XRCC6
CHCHD4ENSG00000163528.81181.606701765.79130-0.579606.735304.84130K562ABCF1
CHCHD4ENSG00000163528.8772.950301532.51640-0.9875016.4101015.13990K562AQR
CHCHD4ENSG00000163528.8518.138301077.41550-1.056204.975403.79190K562BOP1
CHCHD4ENSG00000163528.8373.62380495.86370-0.408402.357001.39950K562CCAR1
CHCHD4ENSG00000163528.8713.534101145.67390-0.683104.074603.12340K562CPSF6
CHCHD4ENSG00000163528.8580.32050728.43060-0.327902.326301.37300K562CSTF2
CHCHD4ENSG00000163528.82681.032802222.211100.270702.591401.64760K562CELF1
CHCHD4ENSG00000163528.8427.85360583.65840-0.448003.309902.15970K562DDX3X
CHCHD4ENSG00000163528.8564.94840783.31300-0.471503.351102.34290K562EFTUD2
CHCHD4ENSG00000163528.8759.604701280.55730-0.7535014.7056013.24560K562EIF2S2
CHCHD4ENSG00000163528.8573.80130838.71690-0.547603.666602.45980K562EIF3D
CHCHD4ENSG00000163528.81359.556301807.19240-0.410605.807504.46940K562EIF4G2
CHCHD4ENSG00000163528.8440.568101165.55630-1.4036011.141809.36580K562FMR1
CHCHD4ENSG00000163528.8597.40770987.85350-0.725604.845203.60100K562FTO
CHCHD4ENSG00000163528.8958.26870634.130700.595508.080407.11440K562FXR1
CHCHD4ENSG00000163528.8523.03840785.32100-0.586404.547802.69090K562GEMIN5
CHCHD4ENSG00000163528.8915.627301109.81840-0.277502.403201.34850K562GLRX3
CHCHD4ENSG00000163528.8567.990801093.89430-0.945506.450705.24200K562GPKOW
CHCHD4ENSG00000163528.8697.126201080.80370-0.632602.634901.45500K562HNRNPA2B1
CHCHD4ENSG00000163528.8442.96040897.27460-1.0184015.2896013.96850K562HNRNPC
CHCHD4ENSG00000163528.81654.267501322.093600.323302.860701.78300K562HNRNPL
CHCHD4ENSG00000163528.8822.043701184.57100-0.527106.997905.57480K562HNRNPU
CHCHD4ENSG00000163528.8605.16850805.26890-0.412102.306701.39400K562IGF2BP2
CHCHD4ENSG00000163528.8600.65180933.89810-0.636702.842901.89330K562KRR1
CHCHD4ENSG00000163528.8814.708001166.81570-0.518208.221606.89820K562MTPAP
CHCHD4ENSG00000163528.8470.51690608.90510-0.372002.550501.37120K562NCBP2
CHCHD4ENSG00000163528.8580.13720762.25310-0.393902.412701.71030K562PRPF8
CHCHD4ENSG00000163528.8586.35860804.48530-0.456303.974702.86240K562PSIP1
CHCHD4ENSG00000163528.81689.339002054.91630-0.282603.228402.19120K562PUM2
CHCHD4ENSG00000163528.8737.87140918.28100-0.315602.196501.70110K562PUS1
CHCHD4ENSG00000163528.8523.92700733.91440-0.486204.139102.92460K562RCC2
CHCHD4ENSG00000163528.8925.613701279.21420-0.466806.365905.16960K562SF3A3
CHCHD4ENSG00000163528.8631.772801054.69610-0.739303.102701.68990K562SFPQ
CHCHD4ENSG00000163528.8454.46290695.73890-0.614405.235803.69540K562SRFBP1
CHCHD4ENSG00000163528.81036.211101310.57230-0.338904.623403.44940K562SRPK2
CHCHD4ENSG00000163528.8568.40140761.24850-0.421503.009201.90560K562SRSF5
CHCHD4ENSG00000163528.81088.475701523.24170-0.484804.268602.65160K562STAU1
CHCHD4ENSG00000163528.8444.39370815.74250-0.8763010.424508.90930K562TARDBP
CHCHD4ENSG00000163528.8569.18630773.78930-0.443002.838201.89000K562TIAL1
CHCHD4ENSG00000163528.8594.60210821.96830-0.467203.614302.50660K562TRIM56
CHCHD4ENSG00000163528.81170.015201415.44010-0.274703.219801.84470K562TROVE2
CHCHD4ENSG00000163528.8921.48840666.505600.467202.415001.40400K562U2AF1
CHCHD4ENSG00000163528.8936.82870688.097300.445103.596402.67890K562U2AF2
CHCHD4ENSG00000163528.8544.17620781.12810-0.521503.918802.68520K562UCHL5
CHCHD4ENSG00000163528.81052.885501374.71460-0.384805.584004.60320K562UPF1
CHCHD4ENSG00000163528.8748.913601235.47010-0.722207.670305.73290K562UTP3
CHCHD4ENSG00000163528.8871.025401176.30970-0.433504.345003.23920K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CHCHD4 is not available on ENCORE database.





10 RBPs can affect the splicing of CHCHD4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECHCHD4ENSG00000163528.8chr3-141634161416358614157925141580241416615414166249-0.065000.000400.00998excludedK562SRSF1
SECHCHD4ENSG00000163528.8chr3-141634161416358614157925141580241416615414166249-0.124000.001970.06162excludedK562PRPF8
SECHCHD4ENSG00000163528.8chr3-1416341614163586141579251415802414166154141662490.149000.000020.00548includedK562MATR3
SECHCHD4ENSG00000163528.8chr3-1416341614163586141579251415802414166154141662490.094000.003090.09069includedK562FXR1
SECHCHD4ENSG00000163528.8chr3-1416341614163586141579251415802414166154141663700.203000.000270.01660includedHepG2PCBP1
SECHCHD4ENSG00000163528.8chr3-1416341614163586141579251415802414166154141663700.246000.000160.02331includedHepG2TAF15
SECHCHD4ENSG00000163528.8chr3-141634161416358614157925141580241416615414166249-0.097000.000020.00160excludedK562HNRNPU
SECHCHD4ENSG00000163528.8chr3-1416341614163586141579251415802414166154141662490.205000.000100.06306includedK562AARS
SECHCHD4ENSG00000163528.8chr3-1416344514163586141579251415802414166154141662490.075000.004160.06021includedK562HNRNPC
A3SSCHCHD4ENSG00000163528.8chr3-1415464314154799141546431415469414157925141580240.056000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CHCHD4 is not avaliable on ENCORE database.