CA5A

General Information

Gene Name       : CA5A
Gene ID             : ENSG00000174990.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CA5A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CA5AENSG00000174990.50.000.000.00ENCSR000AEF
HepG2CA5AENSG00000174990.567.0649.1258.09ENCSR985KAT
K562CA5AENSG00000174990.50.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CA5A is not avaliable on ENCORE database.



Proteins bound to RNA
  • CA5A RNA is bound by 23 proteins.  







eCLIP assay for CA5A is not avaliable on ENCORE database.





23 proteins are bound to CA5A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr168792554587925621-CDS,intron-Distal,intron-Proximal4.6546524.23298HepG2SF3A3
chr168792175187921792-CDS,intron-Distal,intron-Proximal3.905683.24881HepG2SRSF1
chr168796042587960495-CDS,intron-Distal3.4412410.06183HepG2GRWD1
chr168796029087960366-CDS,intron-Distal,intron-Proximal3.2315312.78194HepG2PRPF8
chr168793603987936074-CDS,intron-Distal3.290017.44928HepG2PPIG
chr168792555587925636-CDS,intron-Distal,intron-Proximal4.989507.97588HepG2SF3B4
chr168792176187921789-CDS,intron-Distal,intron-Proximal3.215045.57447HepG2GRWD1
chr168793552487935576-CDS,intron-Distal3.305469.44988HepG2PPIG
chr168793599687936084-CDS,intron-Distal,intron-Proximal3.9055123.23276HepG2PRPF8
chr168795934787959445-intron-Distal3.433437.44196HepG2PRPF4
chr168795936287959420-intron-Distal3.9266518.09059HepG2SLTM
chr168795723487957293-intron-Distal3.705124.22410HepG2SAFB
chr168796625087966302-intron-Distal4.119673.71028HepG2NKRF
chr168794716087947287-intron-Distal3.583583.77258HepG2SRSF9
chr168795567487955767-intron-Distal3.3544610.69925HepG2SLTM
chr168796027287960328-intron-Distal,intron-Proximal3.8469332.64262HepG2RBM22
chr168794836387948402-intron-Distal4.388076.20747HepG2SLTM
chr168795771187957797-intron-Distal4.611103.48299HepG2SRSF9
chr168795307387953136-intron-Distal3.066144.62583HepG2SLTM
chr168794721787947319-intron-Distal4.6742929.63714HepG2SLTM
chr168793429787934400-intron-Distal4.2338316.03312HepG2HNRNPK
chr168794836087948414-intron-Distal3.238835.28660HepG2HLTF
chr168796625487966328-intron-Distal4.274275.53837HepG2XPO5
chr168795846187958547-intron-Distal3.9234913.91403HepG2SLTM
chr168794795287947998-intron-Distal4.822789.60820HepG2SLTM
chr168795146087951496-intron-Distal4.105093.30328HepG2SFPQ
chr168792381487923880-intron-Distal3.356744.39142HepG2PCBP2
chr168794199887942036-intron-Distal4.843575.22630HepG2SLTM
chr168794274387942795-intron-Distal3.661817.67527HepG2SLTM
chr168792843187928515-intron-Distal3.425109.53999HepG2ILF3
chr168794214487942190-intron-Distal4.4113011.14347HepG2RBM22
chr168795859587958644-intron-Distal3.5069411.95331HepG2SLTM
chr168795937787959438-intron-Distal3.650455.78803HepG2FAM120A
chr168793534187935375-intron-Distal3.318354.56790HepG2ILF3
chr168793880787938867-intron-Distal3.027403.66774HepG2CSTF2
chr168792746987927532-intron-Distal3.388705.86976HepG2ILF3
chr168796013687960275-intron-Distal,intron-Proximal3.1394621.53626HepG2EFTUD2
chr168794877787948823-intron-Distal3.926349.28940HepG2SLTM
chr168794822387948271-intron-Distal4.1183511.16142HepG2SLTM
chr168795627587956424-intron-Distal3.3348311.55368HepG2HLTF
chr168795937587959408-intron-Distal3.382134.32662HepG2RBM22
chr168794288587942981-intron-Distal4.144124.79266HepG2SAFB
chr168795759187957671-intron-Distal3.0957015.12374HepG2HLTF
chr168796031787960354-intron-Distal,intron-Proximal3.425213.09957HepG2AQR
chr168794214387942189-intron-Distal3.014095.67582HepG2SLTM
chr168795618387956224-intron-Distal3.821377.20578HepG2SLTM
chr168795882087958860-intron-Distal4.830339.03497HepG2SLTM
chr168796027587960326-intron-Distal,intron-Proximal4.289668.11292HepG2EFTUD2
chr168794804487948113-intron-Distal4.3100113.15371HepG2SLTM
chr168795585387955908-intron-Distal3.013645.25251HepG2RBM22
chr168795584087955894-intron-Distal4.9357810.18345HepG2SLTM
chr168794157487941662-intron-Distal3.587717.45030HepG2CSTF2
chr168795936487959435-intron-Distal3.257417.53278HepG2GTF2F1
chr168795376887953821-intron-Distal3.144024.29582HepG2HLTF
chr168793403487934141-intron-Distal4.274884.61904HepG2SRSF9
chr168793323487933299-intron-Distal3.032175.23310HepG2ILF3
chr168794827187948330-intron-Distal4.5400712.22910HepG2SLTM
chr168794287287942928-intron-Distal5.267576.38758HepG2SLTM
chr168794716287947217-intron-Distal4.1937912.03831HepG2SLTM
chr168795872287958820-intron-Distal4.1738423.44150HepG2SLTM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CA5A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CA5A is not available on ENCORE database.

  • 84 RBPs can affect the levels of CA5A.  








The Knockdown/knockout RNA-Seq assay for CA5A is not available on ENCORE database.





84 RBPs can affect the gene expression of CA5A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CA5AENSG00000174990.3149.99720291.06700-0.956405.380703.92640HepG2AATF
CA5AENSG00000174990.3116.44310379.51870-1.7045012.6792011.57850HepG2ACO1
CA5AENSG00000174990.3398.02350233.796200.767505.664704.30680HepG2ADAR
CA5AENSG00000174990.385.14240592.97930-2.8000044.3876042.63900HepG2AKAP1
CA5AENSG00000174990.3374.21650522.89950-0.482703.901303.11160HepG2AUH
CA5AENSG00000174990.3373.78000265.254600.494702.213501.40920HepG2BCLAF1
CA5AENSG00000174990.3975.57200466.135201.0654014.3579012.75400HepG2CIRBP
CA5AENSG00000174990.3523.38640379.323300.464303.544902.80740HepG2CKAP4
CA5AENSG00000174990.3183.26430119.983900.611002.219701.59550HepG2CPSF6
CA5AENSG00000174990.3357.67960239.752600.577004.073902.83600HepG2YBX3
CA5AENSG00000174990.3281.64300462.52530-0.715707.014106.07920HepG2CELF1
CA5AENSG00000174990.3161.56950300.16880-0.893605.034304.02870HepG2DDX55
CA5AENSG00000174990.3314.77110487.98510-0.632503.799803.08570HepG2DDX6
CA5AENSG00000174990.3352.68020227.065500.635204.127902.94490HepG2DHX30
CA5AENSG00000174990.3660.32690363.067300.862807.420906.41240HepG2DKC1
CA5AENSG00000174990.3410.49510303.083600.437502.682601.61710HepG2EIF3G
CA5AENSG00000174990.3712.91050518.333900.459702.696602.06530HepG2EIF4A3
CA5AENSG00000174990.3282.52690504.72310-0.837105.185604.26340HepG2EIF4B
CA5AENSG00000174990.3639.54950490.646100.382303.066502.19350HepG2EIF4G1
CA5AENSG00000174990.3172.15100305.79670-0.828904.994903.52490HepG2FASTKD2
CA5AENSG00000174990.3114.05700388.48370-1.7681017.4653015.82110HepG2FIP1L1
CA5AENSG00000174990.3159.81120341.22010-1.094306.129804.51700HepG2FUS
CA5AENSG00000174990.3350.04600485.17130-0.470902.539201.89990HepG2G3BP1
CA5AENSG00000174990.3758.54030515.128500.558204.246503.13290HepG2G3BP2
CA5AENSG00000174990.3285.24420197.538800.530002.282301.47590HepG2GEMIN5
CA5AENSG00000174990.3389.27670135.986401.5172014.1327012.79320HepG2GPKOW
CA5AENSG00000174990.3499.61470237.680801.0717011.084909.92420HepG2HNRNPA1
CA5AENSG00000174990.3354.76270218.440200.699503.771402.94570HepG2HNRNPF
CA5AENSG00000174990.3688.43640453.039800.603607.964106.87480HepG2HNRNPL
CA5AENSG00000174990.3319.35510129.776601.299007.247706.28460HepG2HNRNPLL
CA5AENSG00000174990.3173.91540267.97700-0.623703.497802.43640HepG2HNRNPM
CA5AENSG00000174990.3458.55310215.094101.0920010.659709.32760HepG2IGF2BP1
CA5AENSG00000174990.3689.76750493.150500.484003.212202.49060HepG2IGF2BP2
CA5AENSG00000174990.3220.01920462.86290-1.073003.628802.50310HepG2IGF2BP3
CA5AENSG00000174990.3200.07160279.58210-0.482802.477601.40840HepG2LARP7
CA5AENSG00000174990.3988.80210523.243000.9181010.600009.34230HepG2MAGOH
CA5AENSG00000174990.384.15660232.18950-1.464206.399004.85220HepG2METAP2
CA5AENSG00000174990.3206.76530314.31790-0.604203.546002.63240HepG2MSI2
CA5AENSG00000174990.3250.16580132.409100.917803.854702.69820HepG2MTPAP
CA5AENSG00000174990.3333.63680493.15880-0.563804.730003.73340HepG2NOL12
CA5AENSG00000174990.3314.99670115.089701.4525012.3001010.83170HepG2NSUN2
CA5AENSG00000174990.3131.69080259.95790-0.981107.693106.39540HepG2PARN
CA5AENSG00000174990.3434.45800531.81960-0.291702.004401.47490HepG2PCBP1
CA5AENSG00000174990.3333.23370234.241300.508403.250602.45770HepG2PPIL4
CA5AENSG00000174990.3353.75380265.208300.415502.504401.76420HepG2PRPF4
CA5AENSG00000174990.3161.15450231.51180-0.522602.027801.33210HepG2PRPF8
CA5AENSG00000174990.3319.06130541.10470-0.762108.220707.38090HepG2PTBP1
CA5AENSG00000174990.3769.21300470.760500.708307.620906.69700HepG2PUF60
CA5AENSG00000174990.3280.52900499.72990-0.8330010.967509.95080HepG2PUM1
CA5AENSG00000174990.3558.57820386.547900.531004.561203.80770HepG2PUS1
CA5AENSG00000174990.3462.45060586.11860-0.341902.346201.76260HepG2QKI
CA5AENSG00000174990.385.60120311.55640-1.8638012.3063010.90400HepG2RAVER1
CA5AENSG00000174990.3208.12640342.79720-0.719905.264404.12690HepG2RBM15
CA5AENSG00000174990.3147.49880501.78380-1.7664028.8814027.55940HepG2RBM22
CA5AENSG00000174990.3392.00840531.90670-0.440303.077202.37010HepG2RBM25
CA5AENSG00000174990.3241.30560337.14390-0.482502.510001.56920HepG2RBM27
CA5AENSG00000174990.3428.15610602.23220-0.492202.458001.94280HepG2NELFE
CA5AENSG00000174990.3455.81960306.264300.573602.772601.82750HepG2RPS10
CA5AENSG00000174990.3103.87540215.91170-1.055606.674105.76610HepG2RPS19
CA5AENSG00000174990.3353.35920166.774901.083107.343106.05300HepG2RPS3A
CA5AENSG00000174990.3137.71890229.00880-0.733703.204302.36670HepG2RRP9
CA5AENSG00000174990.3297.79590158.531700.909504.560202.60320HepG2SBDS
CA5AENSG00000174990.3238.48770128.439000.892704.355603.48790HepG2SF3B1
CA5AENSG00000174990.3324.98640563.43460-0.793908.355907.41410HepG2SF3B4
CA5AENSG00000174990.3181.82290272.74800-0.585003.790003.05720HepG2SMN1
CA5AENSG00000174990.3200.95070318.31880-0.663602.670501.73200HepG2SMNDC1
CA5AENSG00000174990.3201.84130566.74920-1.4895026.9314025.78620HepG2SRFBP1
CA5AENSG00000174990.3346.29470214.635000.690002.579701.90600HepG2SRSF7
CA5AENSG00000174990.3238.24910478.40260-1.0058011.7152010.72030HepG2SRSF9
CA5AENSG00000174990.31166.91060492.077601.2456037.5904036.20760HepG2SSB
CA5AENSG00000174990.3374.27950528.61310-0.498104.673703.90260HepG2SUCLG1
CA5AENSG00000174990.3305.40390528.49840-0.791209.019508.10160HepG2TAF15
CA5AENSG00000174990.3212.66620126.557300.748703.393202.60000HepG2TARDBP
CA5AENSG00000174990.3489.06180288.057600.763602.308701.33270HepG2TBRG4
CA5AENSG00000174990.3334.94610485.70790-0.536204.258203.22940HepG2TIA1
CA5AENSG00000174990.3381.18550255.201000.578804.094503.51170HepG2TIAL1
CA5AENSG00000174990.3350.68730486.80190-0.473102.128101.40020HepG2UBE2L3
CA5AENSG00000174990.3121.65090176.50200-0.536901.996301.35170HepG2UCHL5
CA5AENSG00000174990.3513.70310404.889800.343302.476301.80960HepG2UPF1
CA5AENSG00000174990.3412.65030273.576100.592902.498501.54830HepG2UPF2
CA5AENSG00000174990.3163.05900306.57970-0.910904.453502.84320HepG2XRCC5
CA5AENSG00000174990.3218.56840342.74740-0.649103.115201.98790HepG2XRCC6
CA5AENSG00000174990.3630.19300294.136801.0992010.716009.30580HepG2XRN2
CA5AENSG00000174990.3193.32860261.72820-0.437002.222801.61130HepG2ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CA5A is not available on ENCORE database.





13 RBPs can affect the splicing of CA5A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECA5AENSG00000174990.3chr16-8793839187938510879360308793612687960353879605510.184000.000180.09444includedHepG2NKRF
SECA5AENSG00000174990.3chr16-879383918793851087936030879361268796035387960551-0.246000.000640.06041excludedHepG2DDX59
SECA5AENSG00000174990.3chr16-8793839187938510879360308793612687960353879605510.222000.000010.00258includedHepG2TBRG4
SECA5AENSG00000174990.3chr16-879272248792733287925404879255608793551787935580-0.168000.000010.00197excludedHepG2TBRG4
SECA5AENSG00000174990.3chr16-879383918793851087936030879361268796035387960551-0.188000.000250.02704excludedHepG2QKI
SECA5AENSG00000174990.3chr16-8793839187938510879360308793612687960353879605510.143000.006610.06620includedHepG2U2AF2
SECA5AENSG00000174990.3chr16-8793839187938510879360308793612687960353879605510.275000.000020.00202includedHepG2MATR3
SECA5AENSG00000174990.3chr16-8793839187938510879360308793612687960353879605510.287000.000000.00000includedHepG2HNRNPL
SECA5AENSG00000174990.3chr16-879383918793851087936030879361268796035387960551-0.185000.000550.06753excludedHepG2HNRNPUL1
SECA5AENSG00000174990.3chr16-8793839187938510879360308793612687960353879605510.207000.000040.04111includedHepG2PPIG
SECA5AENSG00000174990.3chr16-8792722487927332879254048792556087935517879355800.189000.001630.09530includedHepG2TIAL1
SECA5AENSG00000174990.3chr16-879360308793612687925404879255608796035387960551-0.427000.000050.00417excludedHepG2HNRNPU
SECA5AENSG00000174990.3chr16-8792722487927332879254048792556087935517879355800.443000.000000.00004includedHepG2HNRNPC
SECA5AENSG00000174990.3chr16-879360308793612687925404879255608796035387960551-0.411000.000840.03369excludedHepG2HNRNPC
MXECA5AENSG00000174990.3chr16-8792722487927336879355178793558087925404879255608793603087936126-0.104000.001260.075332includedHepG2NOLC1
MXECA5AENSG00000174990.3chr16-87936030879361268793839187938510879355178793558087960353879605510.151000.000080.069211includedHepG2PPIG

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CA5A is not avaliable on ENCORE database.