C5orf28

General Information

Gene Name       : C5orf28
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C5orf28)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C5orf28 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C5orf28 RNA is bound by 5 proteins.  







eCLIP assay for C5orf28 is not avaliable on ENCORE database.





5 proteins are bound to C5orf28 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr54345420843454305-intron-Distal,intron-Proximal3.793723.26999K562KHSRP
chr54348382243483903-intron-Distal3.263573.04054K562GTF2F1
chr54346287443462948-intron-Distal4.118213.59917K562EXOSC5
chr54347990743479970-intron-Distal,intron-Proximal3.752598.36747K562TIA1
chr54347963743479707-intron-Distal4.278534.07352K562KHSRP
chr54348378243483915-intron-Distal3.421604.54482K562DDX42
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C5orf28 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C5orf28 is not available on ENCORE database.

  • 36 RBPs can affect the levels of C5orf28.  








The Knockdown/knockout RNA-Seq assay for C5orf28 is not available on ENCORE database.





36 RBPs can affect the gene expression of C5orf28 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C5orf28ENSG00000151881.10341.82930244.079700.485801.960701.50390HepG2AKAP1
C5orf28ENSG00000151881.10152.4661089.475200.768802.886102.19460HepG2DDX21
C5orf28ENSG00000151881.10519.98400233.813201.1530010.786809.62890HepG2DDX3X
C5orf28ENSG00000151881.10124.8896064.195100.960002.419201.38450HepG2EFTUD2
C5orf28ENSG00000151881.10304.68730207.750900.552402.083101.48210HepG2EIF4B
C5orf28ENSG00000151881.10552.94210281.316400.9748012.9113011.77110HepG2ETF1
C5orf28ENSG00000151881.10273.91210192.743300.506902.831301.88770HepG2HNRNPA2B1
C5orf28ENSG00000151881.10133.30570202.21300-0.601102.262901.62730HepG2HNRNPK
C5orf28ENSG00000151881.1088.39390148.55440-0.749002.301401.62540HepG2ILF2
C5orf28ENSG00000151881.10152.8956084.136700.861603.722902.78720HepG2MSI2
C5orf28ENSG00000151881.10309.12800221.668000.479702.047701.49860HepG2NCBP2
C5orf28ENSG00000151881.1081.03950129.71440-0.678602.527701.82010HepG2PPIL4
C5orf28ENSG00000151881.10270.69000210.739200.361101.861601.35440HepG2PUM1
C5orf28ENSG00000151881.10194.98440130.828500.575602.741902.12770HepG2PUS1
C5orf28ENSG00000151881.10365.89380235.130900.637904.441903.82570HepG2RBM22
C5orf28ENSG00000151881.1086.49980129.51880-0.582402.009701.44660HepG2SAFB2
C5orf28ENSG00000151881.10369.40140265.576000.476003.207702.68110HepG2SRFBP1
C5orf28ENSG00000151881.10288.08480187.194300.621903.614003.09100HepG2SRSF1
C5orf28ENSG00000151881.10163.49720230.59050-0.496102.341001.86060HepG2SSB
C5orf28ENSG00000151881.1096.98440141.35360-0.543501.802001.38040HepG2TIAL1
C5orf28ENSG00000151881.1089.54080142.57360-0.671102.771002.20650HepG2TRIM56
C5orf28ENSG00000151881.10135.0063088.904400.602601.859701.33400HepG2U2AF1
C5orf28ENSG00000151881.10149.23460102.959900.535401.864501.35210HepG2UTP3
C5orf28ENSG00000151881.1073.23310161.91560-1.144704.832003.88330HepG2XRN2
C5orf28ENSG00000151881.10175.53500117.287400.581602.652802.11450HepG2ZNF622
C5orf28ENSG00000151881.10336.45220487.15570-0.534002.224001.70590K562AGGF1
C5orf28ENSG00000151881.10303.42650506.89680-0.740306.533005.49670K562AKAP8L
C5orf28ENSG00000151881.10393.05850531.83650-0.436203.458402.42740K562ATP5C1
C5orf28ENSG00000151881.10201.28940276.52990-0.458202.258501.32300K562DDX3X
C5orf28ENSG00000151881.10253.27590407.44270-0.685905.793804.65680K562EIF3G
C5orf28ENSG00000151881.10186.89230289.82980-0.633002.979002.09700K562FIP1L1
C5orf28ENSG00000151881.10455.39090288.036000.660803.909103.03370K562G3BP2
C5orf28ENSG00000151881.10413.28130537.98200-0.380402.023401.32690K562KIF1C
C5orf28ENSG00000151881.10479.34310602.67040-0.330302.249601.44390K562MBNL1
C5orf28ENSG00000151881.10246.69340328.98200-0.415302.053101.35030K562PPIG
C5orf28ENSG00000151881.10779.04430608.963000.355302.640701.60060K562PUM1
C5orf28ENSG00000151881.10312.98120502.77960-0.683905.407504.68080K562PUS1
C5orf28ENSG00000151881.10303.68570489.81910-0.689706.422105.54480K562RBM15
C5orf28ENSG00000151881.10295.57060417.39650-0.497903.493401.42510K562SLTM
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C5orf28 is not available on ENCORE database.





7 RBPs can affect the splicing of C5orf28 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC5orf28ENSG00000151881.10chr5-4347999143480089434537594345414543483923434839590.671000.000060.04854includedHepG2NKRF
SEC5orf28ENSG00000151881.10chr5-4347999143480089434537594345414543483923434839590.400000.006170.08916includedHepG2U2AF1
SEC5orf28ENSG00000151881.10chr5-4347999143480089434537594345414543483923434839590.207000.000000.00467includedK562PUM1
SEC5orf28ENSG00000151881.10chr5-434537594345414543446443434466594348392343483987-0.215000.000020.00059excludedK562PUS1
SEC5orf28ENSG00000151881.10chr5-4347999143480089434537594345414543483923434839590.294000.002980.09439includedHepG2MATR3
SEC5orf28ENSG00000151881.10chr5-4345455643454707434537594345414543483923434839930.124000.001950.03890includedK562U2AF1
SEC5orf28ENSG00000151881.10chr5-434799914348008943453759434541454348392343483959-0.406000.000600.09719excludedK562SBDS
SEC5orf28ENSG00000151881.10chr5-434537594345414543446443434466594348392343483987-0.104000.002480.05539excludedK562AGGF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C5orf28 is not avaliable on ENCORE database.