ATP2A3

General Information

Gene Name       : ATP2A3
Gene ID             : ENSG00000074370.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ATP2A3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ATP2A3ENSG00000074370.177.3218.0112.67ENCSR000AEF
HepG2ATP2A3ENSG00000074370.170.150.080.11ENCSR985KAT
K562ATP2A3ENSG00000074370.1746.9921.0834.03ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ATP2A3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ATP2A3 RNA is bound by 22 proteins.  







eCLIP assay for ATP2A3 is not avaliable on ENCORE database.





22 proteins are bound to ATP2A3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1738449143844974-3'-UTR,CDS,intron-Distal,intron-Proximal5.530168.03507K562AQR
chr1738275123827594-3'-UTR,intron-Distal3.062564.26159K562DDX55
chr1738273443827382-3'-UTR,intron-Distal4.010086.14390K562PABPC4
chr1738281903828259-3'-UTR,intron-Distal,intron-Proximal4.4008613.86833K562UPF1
chr1738447293844755-3'-UTR,CDS,intron-Distal,intron-Proximal4.381553.71613K562UCHL5
chr1738272003827274-3'-UTR,intron-Distal6.5891019.74978K562UPF1
chr1738273963827449-3'-UTR,intron-Distal5.2095813.16908K562DDX55
chr1738285843828647-3'-UTR,intron-Distal,intron-Proximal3.837133.66583K562AKAP1
chr1738449123844949-3'-UTR,CDS,intron-Distal,intron-Proximal3.974295.07449K562DDX24
chr1738283983828554-3'-UTR,intron-Distal,intron-Proximal4.5160422.25764K562UPF1
chr1738280113828114-3'-UTR,CDS,intron-Distal6.1910826.59129K562UPF1
chr1738281413828185-3'-UTR,intron-Distal4.851099.43510K562UPF1
chr1738275233827586-3'-UTR,intron-Distal4.6313211.27127K562UPF1
chr1738458513845903-3'-UTR,CDS,intron-Distal,intron-Proximal5.603319.95272K562AQR
chr1738274093827459-3'-UTR,intron-Distal4.1179310.50859K562UPF1
chr1738274843827506-3'-UTR,intron-Distal5.202896.81621K562UPF1
chr1738459883846013-3'-UTR,CDS,intron-Distal4.047453.83824K562BUD13
chr1738273893827462-3'-UTR,intron-Distal4.5290219.20984K562PABPC4
chr1738397103839785-3'-UTR,CDS,intron-Distal,intron-Proximal4.126968.79285K562AQR
chr1738286093828657-3'-UTR,intron-Distal,intron-Proximal3.271268.14337K562UPF1
chr1738445133844598-3'-UTR,CDS,intron-Distal3.331783.11583K562UCHL5
chr1738280723828114-3'-UTR,CDS,intron-Distal4.362873.95344K562PUM2
chr1738273393827396-3'-UTR,intron-Distal5.9465511.53775K562DDX55
chr1738407663840811-3'-UTR,CDS,intron-Distal3.941836.19583K562RBM15
chr1738506703850687-5'-UTR,CDS,intron-Distal,intron-Proximal4.4293513.60040K562AQR
chr1738480373848077-5'-UTR,CDS,intron-Distal4.446775.05122K562DDX24
chr1738549393854968-5'-UTR,CDS,intron-Distal5.031735.10740K562DDX24
chr1738505913850690-5'-UTR,CDS,intron-Distal,intron-Proximal3.462919.31721K562BUD13
chr1738484113848473-5'-UTR,CDS,intron-Distal,intron-Proximal3.967667.30031K562AQR
chr1738569953857055-5'-UTR,CDS,intron-Distal,intron-Proximal5.145825.17615K562AQR
chr1738569423856995-5'-UTR,CDS,intron-Distal,intron-Proximal5.210816.22530K562AQR
chr1738549263855024-5'-UTR,CDS,intron-Distal,intron-Proximal4.310009.19405K562SF3B4
chr1738546723854760-5'-UTR,CDS,intron-Distal,intron-Proximal4.312117.15298K562AQR
chr1738507043850742-5'-UTR,CDS,intron-Distal3.786285.57640K562YBX3
chr1738319563832013-CDS,intron-Distal,intron-Proximal3.290536.16228K562UPF1
chr1738320133832070-CDS,intron-Distal,intron-Proximal3.514676.13685K562UPF1
chr1738637193863766-intron-Distal3.978753.30664K562NONO
chr1738319003831957-intron-Distal,intron-Proximal4.527316.77156K562AQR
chr1738572373857328-intron-Distal3.281613.58549K562NONO
chr1738399653840050-intron-Distal4.411316.13272K562AATF
chr1738659293865987-intron-Distal4.603954.42197K562EWSR1
chr1738399673840025-intron-Distal5.4052433.48484K562EIF4G2
chr1738309213830954-intron-Distal3.851863.59342K562CSTF2T
chr1738402583840309-intron-Distal6.4438722.18212K562TARDBP
chr1738657513865803-intron-Distal3.194063.38183K562NONO
chr1738400253840059-intron-Distal6.9629322.69658K562EIF4G2
chr1738505313850602-intron-Distal,intron-Proximal3.868228.25843K562PRPF8
chr1738403093840381-intron-Distal5.0587131.50394K562TARDBP
chr1738397843839903-intron-Distal,intron-Proximal4.6881924.97058K562EIF4G2
chr1738566243856640-intron-Distal,intron-Proximal5.268387.81430K562AQR
chr1738291463829230-intron-Distal4.571866.08649K562CSTF2T
chr1738506413850670-intron-Distal,intron-Proximal5.1554820.18526K562AQR
chr1738314233831489-intron-Distal,intron-Proximal4.124704.48529K562TIA1
chr1738406093840663-intron-Distal,intron-Proximal4.604597.50107K562AQR
chr1738640203864125-intron-Distal4.241898.40323K562NONO
chr1738625143862568-intron-Distal3.730873.17740K562CSTF2T
chr1738399143839967-intron-Distal4.5772419.10214K562EIF4G2
chr1738403083840353-intron-Distal4.6680114.11565K562EIF4G2
chr1738674593867467-intron-Distal4.238637.79506K562AQR
chr1738303973830452-intron-Distal4.154874.04290K562CSTF2T
chr1738565723856624-intron-Distal,intron-Proximal5.7294410.84943K562AQR
chr1738673093867342-intron-Distal4.549854.48002K562AQR
chr1738662043866261-intron-Distal4.463054.27402K562CSTF2T
chr1738405653840656-intron-Distal,intron-Proximal5.9863317.47308K562RBM15
chr1738642163864261-intron-Distal4.044643.53896K562NONO
chr1738401263840172-intron-Distal6.4877621.35741K562TARDBP
chr1738400823840120-intron-Distal4.8482113.29634K562EIF4G2
chr1738600673860125-intron-Distal3.112493.36199K562EWSR1
chr1738309133830955-intron-Distal3.922673.30336K562EWSR1
chr1738506293850679-intron-Distal,intron-Proximal4.411015.17013K562RBM15
chr1738406633840698-intron-Distal,intron-Proximal5.1385019.65719K562AQR
chr1738644193864521-intron-Distal3.997833.58835K562HNRNPK
chr1738659163865988-intron-Distal3.146996.92561K562CSTF2T
chr1738661443866204-intron-Distal4.557384.70168K562CSTF2T
chr1738313413831405-intron-Distal,intron-Proximal4.565343.94788K562AKAP8L
chr1738633413863400-intron-Distal4.285724.58989K562NONO
chr1738287913828864-intron-Distal,intron-Proximal3.918983.28464K562EWSR1
chr1738400693840123-intron-Distal6.2201416.73742K562TARDBP
chr1738402173840258-intron-Distal5.1720016.07949K562TARDBP
chr1738406983840710-intron-Distal,intron-Proximal4.3695514.30285K562AQR
chr1738574263857511-intron-Distal3.492753.15535K562EWSR1
chr1738399633840035-intron-Distal5.6136421.95813K562TARDBP
chr1738575813857664-intron-Distal3.321164.25110K562CSTF2T
chr1738399693840039-intron-Distal3.582406.21987K562AQR
chr1738574223857514-intron-Distal3.537844.50953K562CSTF2T
chr1738290363829106-intron-Distal4.492744.94603K562CSTF2T
chr1738671913867275-intron-Distal3.460483.14365K562NONO
chr1738640763864126-intron-Distal4.126493.02711K562EWSR1
chr1738405063840565-intron-Distal4.454839.38865K562RBM15
chr1738657423865813-intron-Distal3.542686.87411K562CSTF2T
chr1738401723840196-intron-Distal6.5025022.99716K562TARDBP
chr1738485183848588-intron-Distal,intron-Proximal3.540606.11414K562BUD13
chr1738401373840214-intron-Distal6.0747526.98721K562EIF4G2
chr1738640583864141-intron-Distal3.800106.34048K562CSTF2T
chr1738670923867191-intron-Distal4.850366.40665K562NONO
chr1738673973867459-intron-Distal4.7899214.41880K562AQR
chr1738288163828888-intron-Distal,intron-Proximal4.422545.60464K562CSTF2T
chr1738482333848315-intron-Distal,intron-Proximal4.094795.29754K562AKAP8L
chr1738600483860115-intron-Distal3.115483.40404K562CSTF2T
chr1738401563840209-intron-Distal5.246238.00538K562AATF
chr1738400593840082-intron-Distal5.7128915.08277K562EIF4G2
chr1738397903839875-intron-Distal,intron-Proximal3.395806.27955K562RBM15
chr1738485213848589-intron-Distal,intron-Proximal5.8676710.47189K562SF3B4
chr1738292303829314-intron-Distal4.580296.36475K562CSTF2T
chr1738617713861878-intron-Distal4.654875.28165K562CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ATP2A3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ATP2A3 is not available on ENCORE database.

  • 106 RBPs can affect the levels of ATP2A3.  








The Knockdown/knockout RNA-Seq assay for ATP2A3 is not available on ENCORE database.





106 RBPs can affect the gene expression of ATP2A3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ATP2A3ENSG00000074370.1322.569303.558702.664802.978402.33270HepG2DDX3X
ATP2A3ENSG00000074370.1326.355303.049603.111303.551302.85940HepG2DDX6
ATP2A3ENSG00000074370.1316.236302.939002.465702.093501.57010HepG2EIF2S1
ATP2A3ENSG00000074370.1317.397501.745503.317002.498301.53640HepG2FTO
ATP2A3ENSG00000074370.1327.537501.977503.799605.128404.27450HepG2GPKOW
ATP2A3ENSG00000074370.1327.114702.665403.346505.034504.25990HepG2PUF60
ATP2A3ENSG00000074370.131.1262010.96250-3.283001.935401.49380HepG2SRFBP1
ATP2A3ENSG00000074370.1318.502302.777002.736002.493701.47770HepG2TBRG4
ATP2A3ENSG00000074370.1318.430304.206802.131202.348201.69670HepG2UPF1
ATP2A3ENSG00000074370.133891.254704962.79860-0.350907.321506.46280K562AGGF1
ATP2A3ENSG00000074370.131395.932601817.44310-0.380705.393203.22120K562AKAP1
ATP2A3ENSG00000074370.133142.686805163.99440-0.7165013.3433011.74910K562AKAP8L
ATP2A3ENSG00000074370.13395.733502746.44410-2.79500115.04790111.89120K562AQR
ATP2A3ENSG00000074370.134223.512605418.23070-0.359405.861004.47110K562ATP5C1
ATP2A3ENSG00000074370.134649.531203252.551400.515407.838504.73240K562AUH
ATP2A3ENSG00000074370.131530.829801076.021300.508508.559606.83920K562BCLAF1
ATP2A3ENSG00000074370.13767.854801274.77010-0.731306.418505.07940K562BOP1
ATP2A3ENSG00000074370.131641.510802711.83460-0.724205.210603.69890K562CNOT7
ATP2A3ENSG00000074370.131052.175401664.73470-0.661903.512301.34410K562CPSF7
ATP2A3ENSG00000074370.13809.531001700.98930-1.0712014.2608010.62590K562YBX3
ATP2A3ENSG00000074370.131183.82590816.322700.536106.836505.06500K562CSTF2
ATP2A3ENSG00000074370.132161.859704140.42550-0.9375029.2660026.65770K562CELF1
ATP2A3ENSG00000074370.13818.386602467.11260-1.5920079.3824076.49820K562DDX47
ATP2A3ENSG00000074370.132545.203401866.869600.447103.848602.22870K562DDX6
ATP2A3ENSG00000074370.134153.623905556.96900-0.419908.476006.78770K562DKC1
ATP2A3ENSG00000074370.131194.343501674.67660-0.487704.910903.10840K562DNAJC21
ATP2A3ENSG00000074370.13892.604501775.15200-0.991807.570704.82110K562DNAJC2
ATP2A3ENSG00000074370.137552.792301462.812202.36820149.31860146.33860K562EIF2S2
ATP2A3ENSG00000074370.13462.145801584.09240-1.7772023.3865020.81730K562EIF3A
ATP2A3ENSG00000074370.13510.559901076.58870-1.076303.121902.01950K562EIF3D
ATP2A3ENSG00000074370.13434.31190824.13330-0.924104.372703.38180K562EIF3G
ATP2A3ENSG00000074370.13848.750001923.71130-1.1805026.8314023.92990K562EIF4A3
ATP2A3ENSG00000074370.132315.433601732.329700.418502.911501.71980K562EIF4B
ATP2A3ENSG00000074370.13965.790301700.08800-0.815804.531701.97860K562EIF4G1
ATP2A3ENSG00000074370.131823.050103366.82300-0.8850023.6523021.13990K562EIF4G2
ATP2A3ENSG00000074370.13985.915601385.04420-0.490403.150101.93120K562FKBP4
ATP2A3ENSG00000074370.13717.939302000.56510-1.4785047.1366044.81900K562FXR1
ATP2A3ENSG00000074370.13969.75680439.511501.141608.741105.24160K562FXR2
ATP2A3ENSG00000074370.13183.22880500.74290-1.4504014.7087012.78150K562G3BP2
ATP2A3ENSG00000074370.131153.699402428.82110-1.0740034.3019031.21030K562GLRX3
ATP2A3ENSG00000074370.13857.886801948.98010-1.183906.818205.62200K562GRSF1
ATP2A3ENSG00000074370.13950.369702485.11640-1.386807.978106.23230K562HNRNPA1
ATP2A3ENSG00000074370.131731.986402538.00430-0.551303.513301.71940K562HNRNPAB
ATP2A3ENSG00000074370.131017.195501593.48860-0.647606.051805.20280K562HNRNPC
ATP2A3ENSG00000074370.131405.482802752.42120-0.969605.516104.24040K562HNRNPU
ATP2A3ENSG00000074370.135945.537701505.764001.9812052.2521049.57850K562HSPD1
ATP2A3ENSG00000074370.132353.928001210.093100.959902.923501.86030K562IGF2BP2
ATP2A3ENSG00000074370.131439.569402475.86600-0.782305.238203.23850K562ILF2
ATP2A3ENSG00000074370.13984.607001627.09140-0.724708.126805.65370K562ILF3
ATP2A3ENSG00000074370.131094.725501572.37750-0.522405.020903.03060K562KHDRBS1
ATP2A3ENSG00000074370.133039.867905480.36760-0.850307.313405.81110K562KIF1C
ATP2A3ENSG00000074370.13580.095001104.97660-0.929707.605105.97040K562KRR1
ATP2A3ENSG00000074370.132272.460201421.942000.676303.696301.85830K562LSM11
ATP2A3ENSG00000074370.13765.465201270.48770-0.731002.719401.88770K562MAGOH
ATP2A3ENSG00000074370.132738.671903588.59030-0.389904.364702.94750K562MSI2
ATP2A3ENSG00000074370.13863.224202553.59550-1.5647086.0899082.91490K562MTPAP
ATP2A3ENSG00000074370.132932.058004303.25730-0.553503.106102.16370K562NAA15
ATP2A3ENSG00000074370.132297.312603682.99050-0.680906.108503.85020K562NOL12
ATP2A3ENSG00000074370.131667.53400992.787500.748103.317301.87440K562NONO
ATP2A3ENSG00000074370.131981.486202837.23560-0.5179017.6673016.00360K562NSUN2
ATP2A3ENSG00000074370.131353.549102780.20830-1.038403.320002.20720K562PABPN1
ATP2A3ENSG00000074370.13427.518101974.09460-2.2071050.6721047.65310K562PCBP3
ATP2A3ENSG00000074370.13309.781901514.13970-2.2892076.2933073.12480K562POLR2G
ATP2A3ENSG00000074370.131758.835101261.024100.479904.173903.13930K562PPIG
ATP2A3ENSG00000074370.131269.216602817.45930-1.150509.599106.57030K562PRPF6
ATP2A3ENSG00000074370.13377.08360979.03590-1.376504.040803.13340K562PRPF8
ATP2A3ENSG00000074370.132084.278201428.856800.544605.748904.37200K562PSIP1
ATP2A3ENSG00000074370.131596.079903673.37080-1.2026031.9862029.22920K562PUF60
ATP2A3ENSG00000074370.132736.898803907.82480-0.513804.433903.05560K562PUM1
ATP2A3ENSG00000074370.132152.011205121.42680-1.2509031.0561029.21320K562PUS1
ATP2A3ENSG00000074370.132195.231304989.92520-1.1846050.3170047.67670K562RBM15
ATP2A3ENSG00000074370.132397.175801153.729701.054903.255101.71140K562RBM34
ATP2A3ENSG00000074370.131021.208901304.26010-0.353002.194201.31430K562RCC2
ATP2A3ENSG00000074370.13449.63120996.81870-1.148603.378302.47390K562RPS19
ATP2A3ENSG00000074370.131102.886102419.14840-1.1332011.952508.33760K562RPS3A
ATP2A3ENSG00000074370.131070.24920757.446300.498602.370501.45260K562RPS3
ATP2A3ENSG00000074370.131239.927302388.65140-0.9459013.362809.81460K562SAFB2
ATP2A3ENSG00000074370.13699.190101349.31750-0.9485016.5118014.14120K562SAFB
ATP2A3ENSG00000074370.131677.037202470.25790-0.558703.153101.51370K562SBDS
ATP2A3ENSG00000074370.13655.427501394.95660-1.0897018.8200015.44460K562SDAD1
ATP2A3ENSG00000074370.131865.376602799.68440-0.5858013.2751011.60140K562SF3A3
ATP2A3ENSG00000074370.13721.019001230.67170-0.771306.627905.08480K562SF3B1
ATP2A3ENSG00000074370.13391.92860520.66280-0.409802.964202.07790K562SF3B4
ATP2A3ENSG00000074370.13843.264301715.24280-1.0244018.3938015.49240K562SLBP
ATP2A3ENSG00000074370.131630.919102919.57630-0.840102.605201.42840K562SNRNP200
ATP2A3ENSG00000074370.131421.797202868.34230-1.0125029.6622027.22450K562SRPK2
ATP2A3ENSG00000074370.13535.705901210.31880-1.175904.872103.93750K562SRSF1
ATP2A3ENSG00000074370.131272.28120731.024000.799304.993503.50720K562SRSF4
ATP2A3ENSG00000074370.132107.436801143.408500.882003.907002.62180K562SRSF5
ATP2A3ENSG00000074370.131322.867001723.38850-0.381603.901202.08950K562SRSF9
ATP2A3ENSG00000074370.131003.269901457.19170-0.538504.493602.71150K562SSRP1
ATP2A3ENSG00000074370.13931.005501332.69950-0.517504.369602.72800K562STAU1
ATP2A3ENSG00000074370.132325.492803205.00850-0.462808.129405.76340K562SUCLG1
ATP2A3ENSG00000074370.131469.413103583.60040-1.286203.718001.47570K562SUGP2
ATP2A3ENSG00000074370.131468.897003493.34750-1.249904.386702.42450K562SUPT6H
ATP2A3ENSG00000074370.13623.257001518.80200-1.2850034.1148031.60510K562SYNCRIP
ATP2A3ENSG00000074370.13278.73910491.53640-0.818403.481101.76340K562TAF15
ATP2A3ENSG00000074370.132895.725201181.359101.2934030.7056027.74360K562TIA1
ATP2A3ENSG00000074370.13833.428301374.24690-0.721504.030002.88670K562TIAL1
ATP2A3ENSG00000074370.132338.276001159.993401.011209.899307.43400K562TRA2A
ATP2A3ENSG00000074370.13240.35560485.35820-1.013908.883206.74050K562U2AF1
ATP2A3ENSG00000074370.13248.27630501.27730-1.0137012.2356010.53010K562U2AF2
ATP2A3ENSG00000074370.133723.366303008.384100.307505.584104.60320K562UPF1
ATP2A3ENSG00000074370.133051.728705192.42990-0.766802.582201.34940K562UTP18
ATP2A3ENSG00000074370.131295.426602574.17440-0.9907024.0563021.61840K562WDR3
ATP2A3ENSG00000074370.131115.511502676.87660-1.2628067.9514065.15010K562WDR43
ATP2A3ENSG00000074370.132239.161603253.95640-0.539208.232406.06300K562WRN
ATP2A3ENSG00000074370.131154.235802654.11310-1.2013010.083806.83450K562XRCC6
ATP2A3ENSG00000074370.132507.745703093.99690-0.303102.752701.89230K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ATP2A3 is not available on ENCORE database.





4 RBPs can affect the splicing of ATP2A3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEATP2A3ENSG00000074370.13chr17-384835338484423847997384810038506843851149-0.075000.001770.04882excludedK562AKAP8L
SEATP2A3ENSG00000074370.13chr17-383152038316213827168382873538319563832074-0.062000.001440.09965excludedK562XRCC6
A3SSATP2A3ENSG00000074370.13chr17-3831956383211338319563832074383262138327390.179000.000000.00001longerK562AQR
A3SSATP2A3ENSG00000074370.13chr17-3846684384685738466843846816384799738481000.075000.000530.00395longerK562AQR
MXEATP2A3ENSG00000074370.13chr17-38312743831332383152038316063828689382873538319563832074-0.428000.002610.035682includedK562DROSHA

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ATP2A3 is not avaliable on ENCORE database.