APBA3

General Information

Gene Name       : APBA3
Gene ID             : ENSG00000011132.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: APBA3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878APBA3ENSG00000011132.111.215.973.59ENCSR000AEF
HepG2APBA3ENSG00000011132.119.933.326.62ENCSR985KAT
K562APBA3ENSG00000011132.1113.396.039.71ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for APBA3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • APBA3 RNA is bound by 4 proteins.  







eCLIP assay for APBA3 is not avaliable on ENCORE database.





4 proteins are bound to APBA3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1937615333761613-5'-UTR,intron-Distal,intron-Proximal3.937633.86664K562DDX3X
chr1937540183754056-CDS,intron-Distal,intron-Proximal4.244183.20743HepG2PPIG
chr1937598663759924-CDS,intron-Distal4.032893.81597K562RBM15
chr1937552843755399-intron-Distal3.896023.08243K562ILF3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for APBA3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for APBA3 is not available on ENCORE database.

  • 66 RBPs can affect the levels of APBA3.  








The Knockdown/knockout RNA-Seq assay for APBA3 is not available on ENCORE database.





66 RBPs can affect the gene expression of APBA3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
APBA3ENSG00000011132.7390.31450245.524900.668706.050405.22100HepG2ACO1
APBA3ENSG00000011132.7339.18530246.660700.459402.862602.08380HepG2AKAP8L
APBA3ENSG00000011132.7224.65570149.907400.583502.451901.88490HepG2BOP1
APBA3ENSG00000011132.7325.95870245.450200.409202.449801.81630HepG2CKAP4
APBA3ENSG00000011132.7245.55080127.492100.945503.076402.26720HepG2CNOT7
APBA3ENSG00000011132.7186.76950133.303700.486401.909701.35680HepG2CELF1
APBA3ENSG00000011132.7234.47720143.344200.709904.316703.42430HepG2DAZAP1
APBA3ENSG00000011132.7327.59030167.611000.966706.316305.40910HepG2DDX3X
APBA3ENSG00000011132.7269.13580144.043400.901704.217503.46760HepG2DDX6
APBA3ENSG00000011132.7130.1875086.267700.593602.049001.43340HepG2DNAJC21
APBA3ENSG00000011132.7185.2900085.522101.115307.877906.84830HepG2DNAJC2
APBA3ENSG00000011132.7291.57490138.410801.074806.061905.20270HepG2EIF2S1
APBA3ENSG00000011132.7261.91280148.956100.814102.392801.75170HepG2EIF4B
APBA3ENSG00000011132.7287.03860154.390600.894605.329004.38920HepG2FXR1
APBA3ENSG00000011132.7152.0585087.094400.803902.403801.79810HepG2HNRNPA1
APBA3ENSG00000011132.7218.61890130.954500.739304.519103.62810HepG2HNRNPF
APBA3ENSG00000011132.7273.49110145.085900.914503.455502.67860HepG2HNRNPK
APBA3ENSG00000011132.7227.24120130.578700.799205.126004.23180HepG2HNRNPL
APBA3ENSG00000011132.7151.4548096.240800.654102.840602.22620HepG2HNRNPU
APBA3ENSG00000011132.7209.89100128.953600.702703.788902.95270HepG2IGF2BP1
APBA3ENSG00000011132.7145.1434098.305900.562002.310501.63370HepG2ILF2
APBA3ENSG00000011132.7316.57030154.444901.035307.079406.04620HepG2MAGOH
APBA3ENSG00000011132.7257.65970155.294600.730403.262602.58210HepG2MATR3
APBA3ENSG00000011132.7389.66350158.940801.2936011.141109.91470HepG2NCBP2
APBA3ENSG00000011132.7234.14010109.051901.102303.491902.25530HepG2NONO
APBA3ENSG00000011132.7260.69740116.611901.160605.130603.89140HepG2PABPC1
APBA3ENSG00000011132.7217.40930141.492300.619602.111601.47250HepG2PABPC4
APBA3ENSG00000011132.7212.63900119.870200.826805.146404.35960HepG2PCBP1
APBA3ENSG00000011132.7150.3596085.838200.808603.732402.88810HepG2PPIL4
APBA3ENSG00000011132.7217.16920121.984800.832005.061004.36750HepG2PTBP1
APBA3ENSG00000011132.7279.11270144.028800.954408.307307.39460HepG2PUM1
APBA3ENSG00000011132.7209.80670132.086200.667503.208602.54250HepG2QKI
APBA3ENSG00000011132.7201.15340113.269100.828403.327002.23330HepG2RBM27
APBA3ENSG00000011132.7236.73770135.747100.802304.653703.98600HepG2NELFE
APBA3ENSG00000011132.7205.02950126.448600.697203.546802.86020HepG2RECQL
APBA3ENSG00000011132.7178.13740104.459700.769902.907902.08960HepG2RPS2
APBA3ENSG00000011132.7144.7366085.703500.755903.262702.57390HepG2SAFB2
APBA3ENSG00000011132.7292.81080126.979701.2053010.834809.78310HepG2SF3B4
APBA3ENSG00000011132.7200.63410130.090800.624903.083802.34860HepG2SLBP
APBA3ENSG00000011132.7149.2007099.939500.578002.245801.65690HepG2SMN1
APBA3ENSG00000011132.7202.98730114.673100.823802.547801.63010HepG2SMNDC1
APBA3ENSG00000011132.7198.52580133.961900.567402.522801.92060HepG2SRSF5
APBA3ENSG00000011132.7152.56390107.843000.500401.962101.48240HepG2SRSF9
APBA3ENSG00000011132.7222.44760111.677200.994003.470102.22530HepG2STIP1
APBA3ENSG00000011132.7279.31030152.354900.874306.793705.89440HepG2SUCLG1
APBA3ENSG00000011132.7177.2621093.495800.922804.806904.18500HepG2TIAL1
APBA3ENSG00000011132.7207.9252094.353201.139808.428407.53010HepG2TRIM56
APBA3ENSG00000011132.7207.66890132.549900.647702.358301.55800HepG2TUFM
APBA3ENSG00000011132.7295.17650140.298401.073006.013104.74920HepG2UBE2L3
APBA3ENSG00000011132.7488.58600344.525300.503903.968703.31160K562AGGF1
APBA3ENSG00000011132.7501.07720378.567600.404402.401801.49550K562AKAP8
APBA3ENSG00000011132.7551.29840358.490800.620804.986204.09820K562AKAP8L
APBA3ENSG00000011132.7591.09930351.150400.751206.523105.68440K562AQR
APBA3ENSG00000011132.7500.09430376.136800.410802.861001.93360K562ATP5C1
APBA3ENSG00000011132.7183.56430120.376300.608602.417201.43920K562CSTF2
APBA3ENSG00000011132.742.0948092.99360-1.143503.566302.73940K562G3BP2
APBA3ENSG00000011132.7199.67900120.797000.725003.221202.36630K562GPKOW
APBA3ENSG00000011132.7239.29560156.915700.608702.763201.62110K562HNRNPF
APBA3ENSG00000011132.7296.97060452.35170-0.607103.273501.63570K562NOL12
APBA3ENSG00000011132.7292.63150200.302300.546802.898502.05710K562PPIG
APBA3ENSG00000011132.7346.38900480.01760-0.470702.630001.59200K562PUM1
APBA3ENSG00000011132.7564.22040355.548500.666105.123304.41290K562PUS1
APBA3ENSG00000011132.7442.72550346.408600.353801.982101.46510K562RBM15
APBA3ENSG00000011132.7211.90950143.793000.559402.259301.36850K562RCC2
APBA3ENSG00000011132.7221.5761096.612601.197409.107507.50770K562SF3B4
APBA3ENSG00000011132.7190.42300129.530500.555802.244201.31840K562SRSF5
APBA3ENSG00000011132.752.4394094.58690-0.851002.544601.32090K562SSB
APBA3ENSG00000011132.7199.88720138.729900.526802.077101.45820K562TARDBP
APBA3ENSG00000011132.7215.61140133.829800.687903.398902.47800K562TIA1
APBA3ENSG00000011132.7217.10580131.409300.724203.537202.27340K562TRA2A
APBA3ENSG00000011132.7146.2455093.029100.652502.469401.70990K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for APBA3 is not available on ENCORE database.





1 RBPs can affect the splicing of APBA3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RIAPBA3ENSG00000011132.7chr19-3753894375404637538943753924375401637540460.096000.003090.02049includedK562PUS1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for APBA3 is not avaliable on ENCORE database.