ENCORE RBNS:ZFP36

ZFP36 RNA Bind-n-Seq

Experiment Information (Status: Released)


RBP	ZFP36
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	102

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
ZFP36-1300	RBNS	20-20	1300	ZFP36_1300.fastq.gz
ZFP36-20	RBNS	20-20	20	ZFP36_20.fastq.gz
ZFP36-320	RBNS	20-20	320	ZFP36_320.fastq.gz
ZFP36-5	RBNS	20-20	5	ZFP36_5.fastq.gz
ZFP36-80	RBNS	20-20	80	ZFP36_80.fastq.gz
ZFP36-input	CN	20-20	0	ZFP36_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:ZFP36	ENCSR315VQD	experiment	RNA Bind-n-Seq	ZFP36		Yes	Released	2022-07-12	ENCODE3			8144
chris-burge:lib-ZFP36-1	ENCLB527SZA	library	RNA Bind-n-Seq	ZFP36		Yes	Released	2022-07-12	ENCODE3			8617
chris-burge:lib-ZFP36-2	ENCLB160NPT	library	RNA Bind-n-Seq	ZFP36		Yes	Released	2022-07-12	ENCODE3			8618
chris-burge:lib-ZFP36-3	ENCLB490WLY	library	RNA Bind-n-Seq	ZFP36		Yes	Released	2022-07-12	ENCODE3			8619
chris-burge:lib-ZFP36-4	ENCLB192WKO	library	RNA Bind-n-Seq	ZFP36		Yes	Released	2022-07-12	ENCODE3			8620
chris-burge:lib-ZFP36-5	ENCLB616RNJ	library	RNA Bind-n-Seq	ZFP36		Yes	Released	2022-07-12	ENCODE3			8621
chris-burge:ZFP36_1300.fastq.gz	ENCFF248KPL	file_fastq	RNA Bind-n-Seq	ZFP36		Yes	Released	2022-07-14	ENCODE3			9004
chris-burge:ZFP36_20.fastq.gz	ENCFF113XPZ	file_fastq	RNA Bind-n-Seq	ZFP36		Yes	Released	2022-07-14	ENCODE3			9005
chris-burge:ZFP36_320.fastq.gz	ENCFF089AAP	file_fastq	RNA Bind-n-Seq	ZFP36		Yes	Released	2022-07-14	ENCODE3			9006
chris-burge:ZFP36_5.fastq.gz	ENCFF006ZXM	file_fastq	RNA Bind-n-Seq	ZFP36		Yes	Released	2022-07-14	ENCODE3			9007
chris-burge:ZFP36_80.fastq.gz	ENCFF149ZPE	file_fastq	RNA Bind-n-Seq	ZFP36		Yes	Released	2022-07-14	ENCODE3			9008
chris-burge:ZFP36_enrichment_R.4mers.txt	ENCFF735TCL	file_enrichment	RNA Bind-n-Seq	ZFP36		Yes	Released	2022-07-14	ENCODE3			9555
chris-burge:ZFP36_enrichment_R.5mers.txt	ENCFF170BKQ	file_enrichment	RNA Bind-n-Seq	ZFP36		Yes	Released	2022-07-14	ENCODE3			9556
chris-burge:ZFP36_enrichment_R.6mers.txt	ENCFF522CPG	file_enrichment	RNA Bind-n-Seq	ZFP36		Yes	Released	2022-07-14	ENCODE3			9557
chris-burge:ZFP36_enrichment_R.7mers.txt	ENCFF193EMA	file_enrichment	RNA Bind-n-Seq	ZFP36		Yes	Released	2022-07-14	ENCODE3			9558
chris-burge:ZFP36_est_binding_frac.4mers.txt	ENCFF744DNT	file_library-fraction	RNA Bind-n-Seq	ZFP36		Yes	Released	2022-07-14	ENCODE3			9559
chris-burge:ZFP36_est_binding_frac.5mers.txt	ENCFF916BLW	file_library-fraction	RNA Bind-n-Seq	ZFP36		Yes	Released	2022-07-14	ENCODE3			9560
chris-burge:ZFP36_est_binding_frac.6mers.txt	ENCFF633DXF	file_library-fraction	RNA Bind-n-Seq	ZFP36		Yes	Released	2022-07-14	ENCODE3			9561
chris-burge:ZFP36_est_binding_frac.7mers.txt	ENCFF151RNY	file_library-fraction	RNA Bind-n-Seq	ZFP36		Yes	Released	2022-07-14	ENCODE3			9562

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
ZFP36.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
ZFP36_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		A1CF_input.fastq.gz	ENCODE3
ZFP36_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		A1CF_input.fastq.gz	ENCODE3
ZFP36_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		A1CF_input.fastq.gz	ENCODE3
ZFP36_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		A1CF_input.fastq.gz	ENCODE3
ZFP36_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		A1CF_input.fastq.gz	ENCODE3
ZFP36_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
ZFP36_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	ZFP36_1300.fastq.gz,ZFP36_20.fastq.gz,ZFP36_320.fastq.gz,ZFP36_5.fastq.gz,ZFP36_80.fastq.gz,A1CF_input.fastq.gz		ENCODE3
ZFP36_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	ZFP36_1300.fastq.gz,ZFP36_20.fastq.gz,ZFP36_320.fastq.gz,ZFP36_5.fastq.gz,ZFP36_80.fastq.gz,A1CF_input.fastq.gz		ENCODE3
ZFP36_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	ZFP36_1300.fastq.gz,ZFP36_20.fastq.gz,ZFP36_320.fastq.gz,ZFP36_5.fastq.gz,ZFP36_80.fastq.gz,A1CF_input.fastq.gz		ENCODE3
ZFP36_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	ZFP36_1300.fastq.gz,ZFP36_20.fastq.gz,ZFP36_320.fastq.gz,ZFP36_5.fastq.gz,ZFP36_80.fastq.gz,A1CF_input.fastq.gz		ENCODE3
ZFP36_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	ZFP36_1300.fastq.gz,ZFP36_20.fastq.gz,ZFP36_320.fastq.gz,ZFP36_5.fastq.gz,ZFP36_80.fastq.gz,A1CF_input.fastq.gz		ENCODE3
ZFP36_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	ZFP36_1300.fastq.gz,ZFP36_20.fastq.gz,ZFP36_320.fastq.gz,ZFP36_5.fastq.gz,ZFP36_80.fastq.gz,A1CF_input.fastq.gz		ENCODE3
ZFP36_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	ZFP36_1300.fastq.gz,ZFP36_20.fastq.gz,ZFP36_320.fastq.gz,ZFP36_5.fastq.gz,ZFP36_80.fastq.gz,A1CF_input.fastq.gz		ENCODE3
ZFP36_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	ZFP36_1300.fastq.gz,ZFP36_20.fastq.gz,ZFP36_320.fastq.gz,ZFP36_5.fastq.gz,ZFP36_80.fastq.gz,A1CF_input.fastq.gz		ENCODE3