ENCORE RBNS:RBM41

RBM41 RNA Bind-n-Seq

Experiment Information (Status: Released)


RBP	RBM41
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	51

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
RBM41-1300	RBNS	20-20	1300	RBM41_1300.fastq.gz
RBM41-20	RBNS	20-20	20	RBM41_20.fastq.gz
RBM41-320	RBNS	20-20	320	RBM41_320.fastq.gz
RBM41-5	RBNS	20-20	5	RBM41_5.fastq.gz
RBM41-80	RBNS	20-20	80	RBM41_80.fastq.gz
RBM41-input	CN	20-20	0	RBM41_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:RBM41	ENCSR637HFY	experiment	RNA Bind-n-Seq	RBM41		Yes	Released	2022-07-12	ENCODE3			8095
chris-burge:lib-RBM41-1	ENCLB387MVQ	library	RNA Bind-n-Seq	RBM41		Yes	Released	2022-07-12	ENCODE3			8469
chris-burge:lib-RBM41-2	ENCLB785JOO	library	RNA Bind-n-Seq	RBM41		Yes	Released	2022-07-12	ENCODE3			8470
chris-burge:lib-RBM41-3	ENCLB627TLB	library	RNA Bind-n-Seq	RBM41		Yes	Released	2022-07-12	ENCODE3			8471
chris-burge:lib-RBM41-4	ENCLB723ANY	library	RNA Bind-n-Seq	RBM41		Yes	Released	2022-07-12	ENCODE3			8472
chris-burge:lib-RBM41-5	ENCLB567OIO	library	RNA Bind-n-Seq	RBM41		Yes	Released	2022-07-12	ENCODE3			8473
chris-burge:RBM41_1300.fastq.gz	ENCFF644BBX	file_fastq	RNA Bind-n-Seq	RBM41		Yes	Released	2022-07-14	ENCODE3			8870
chris-burge:RBM41_20.fastq.gz	ENCFF658PGT	file_fastq	RNA Bind-n-Seq	RBM41		Yes	Released	2022-07-14	ENCODE3			8871
chris-burge:RBM41_320.fastq.gz	ENCFF550YXW	file_fastq	RNA Bind-n-Seq	RBM41		Yes	Released	2022-07-14	ENCODE3			8872
chris-burge:RBM41_5.fastq.gz	ENCFF143JJC	file_fastq	RNA Bind-n-Seq	RBM41		Yes	Released	2022-07-14	ENCODE3			8873
chris-burge:RBM41_80.fastq.gz	ENCFF590PBM	file_fastq	RNA Bind-n-Seq	RBM41		Yes	Released	2022-07-14	ENCODE3			8874
chris-burge:RBM41_enrichment_R.4mers.txt	ENCFF388UFE	file_enrichment	RNA Bind-n-Seq	RBM41		Yes	Released	2022-07-14	ENCODE3			9365
chris-burge:RBM41_enrichment_R.5mers.txt	ENCFF051YRS	file_enrichment	RNA Bind-n-Seq	RBM41		Yes	Released	2022-07-14	ENCODE3			9366
chris-burge:RBM41_enrichment_R.6mers.txt	ENCFF139WJC	file_enrichment	RNA Bind-n-Seq	RBM41		Yes	Released	2022-07-14	ENCODE3			9367
chris-burge:RBM41_enrichment_R.7mers.txt	ENCFF446PHG	file_enrichment	RNA Bind-n-Seq	RBM41		Yes	Released	2022-07-14	ENCODE3			9368
chris-burge:RBM41_est_binding_frac.4mers.ordered_by_enrichment.txt	ENCFF179YRS	file_library-fraction	RNA Bind-n-Seq	RBM41		Yes	Released	2022-07-14	ENCODE3			9369
chris-burge:RBM41_est_binding_frac.5mers.ordered_by_enrichment.txt	ENCFF851WUY	file_library-fraction	RNA Bind-n-Seq	RBM41		Yes	Released	2022-07-14	ENCODE3			9370
chris-burge:RBM41_est_binding_frac.6mers.ordered_by_enrichment.txt	ENCFF239QYS	file_library-fraction	RNA Bind-n-Seq	RBM41		Yes	Released	2022-07-14	ENCODE3			9371
chris-burge:RBM41_est_binding_frac.7mers.ordered_by_enrichment.txt	ENCFF808IXT	file_library-fraction	RNA Bind-n-Seq	RBM41		Yes	Released	2022-07-14	ENCODE3			9372

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
RBM41.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
RBM41_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM45_input.fastq.gz	ENCODE3
RBM41_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM45_input.fastq.gz	ENCODE3
RBM41_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM45_input.fastq.gz	ENCODE3
RBM41_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM45_input.fastq.gz	ENCODE3
RBM41_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM45_input.fastq.gz	ENCODE3
RBM41_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
RBM41_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM41_1300.fastq.gz,RBM41_20.fastq.gz,RBM41_320.fastq.gz,RBM41_5.fastq.gz,RBM41_80.fastq.gz,RBM45_input.fastq.gz		ENCODE3
RBM41_est_binding_frac.4mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM41_1300.fastq.gz,RBM41_20.fastq.gz,RBM41_320.fastq.gz,RBM41_5.fastq.gz,RBM41_80.fastq.gz,RBM45_input.fastq.gz		ENCODE3
RBM41_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM41_1300.fastq.gz,RBM41_20.fastq.gz,RBM41_320.fastq.gz,RBM41_5.fastq.gz,RBM41_80.fastq.gz,RBM45_input.fastq.gz		ENCODE3
RBM41_est_binding_frac.5mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM41_1300.fastq.gz,RBM41_20.fastq.gz,RBM41_320.fastq.gz,RBM41_5.fastq.gz,RBM41_80.fastq.gz,RBM45_input.fastq.gz		ENCODE3
RBM41_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM41_1300.fastq.gz,RBM41_20.fastq.gz,RBM41_320.fastq.gz,RBM41_5.fastq.gz,RBM41_80.fastq.gz,RBM45_input.fastq.gz		ENCODE3
RBM41_est_binding_frac.6mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM41_1300.fastq.gz,RBM41_20.fastq.gz,RBM41_320.fastq.gz,RBM41_5.fastq.gz,RBM41_80.fastq.gz,RBM45_input.fastq.gz		ENCODE3
RBM41_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM41_1300.fastq.gz,RBM41_20.fastq.gz,RBM41_320.fastq.gz,RBM41_5.fastq.gz,RBM41_80.fastq.gz,RBM45_input.fastq.gz		ENCODE3
RBM41_est_binding_frac.7mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM41_1300.fastq.gz,RBM41_20.fastq.gz,RBM41_320.fastq.gz,RBM41_5.fastq.gz,RBM41_80.fastq.gz,RBM45_input.fastq.gz		ENCODE3