ENCORE RBNS:RBM4

RBM4 RNA Bind-n-Seq

Experiment Information (Status: Released)


RBP	RBM4
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	26

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
RBM4-1300	RBNS	20-20	1300	RBM4_1300.fastq.gz
RBM4-20	RBNS	20-20	20	RBM4_20.fastq.gz
RBM4-320	RBNS	20-20	320	RBM4_320.fastq.gz
RBM4-5	RBNS	20-20	5	RBM4_5.fastq.gz
RBM4-80	RBNS	20-20	80	RBM4_80.fastq.gz
RBM4-input	CN	20-20	0	RBM4_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:RBM4	ENCSR331BKR	experiment	RNA Bind-n-Seq	RBM4		Yes	Released	2022-07-12	ENCODE3			8094
chris-burge:lib-RBM4-1	ENCLB076GFH	library	RNA Bind-n-Seq	RBM4		Yes	Released	2022-07-12	ENCODE3			8464
chris-burge:lib-RBM4-2	ENCLB058MJD	library	RNA Bind-n-Seq	RBM4		Yes	Released	2022-07-12	ENCODE3			8465
chris-burge:lib-RBM4-3	ENCLB911CMB	library	RNA Bind-n-Seq	RBM4		Yes	Released	2022-07-12	ENCODE3			8466
chris-burge:lib-RBM4-4	ENCLB203TIY	library	RNA Bind-n-Seq	RBM4		Yes	Released	2022-07-12	ENCODE3			8467
chris-burge:lib-RBM4-5	ENCLB844EOU	library	RNA Bind-n-Seq	RBM4		Yes	Released	2022-07-12	ENCODE3			8468
chris-burge:RBM4_1300.fastq.gz	ENCFF527ZSP	file_fastq	RNA Bind-n-Seq	RBM4		Yes	Released	2022-07-14	ENCODE3			8865
chris-burge:RBM4_20.fastq.gz	ENCFF290VRZ	file_fastq	RNA Bind-n-Seq	RBM4		Yes	Released	2022-07-14	ENCODE3			8866
chris-burge:RBM4_320.fastq.gz	ENCFF940CRO	file_fastq	RNA Bind-n-Seq	RBM4		Yes	Released	2022-07-14	ENCODE3			8867
chris-burge:RBM4_5.fastq.gz	ENCFF401FZE	file_fastq	RNA Bind-n-Seq	RBM4		Yes	Released	2022-07-14	ENCODE3			8868
chris-burge:RBM4_80.fastq.gz	ENCFF662YDT	file_fastq	RNA Bind-n-Seq	RBM4		Yes	Released	2022-07-14	ENCODE3			8869
chris-burge:RBM4_enrichment_R.4mers.txt	ENCFF667LUD	file_enrichment	RNA Bind-n-Seq	RBM4		Yes	Released	2022-07-14	ENCODE3			9357
chris-burge:RBM4_enrichment_R.5mers.txt	ENCFF620EXI	file_enrichment	RNA Bind-n-Seq	RBM4		Yes	Released	2022-07-14	ENCODE3			9358
chris-burge:RBM4_enrichment_R.6mers.txt	ENCFF891RFM	file_enrichment	RNA Bind-n-Seq	RBM4		Yes	Released	2022-07-14	ENCODE3			9359
chris-burge:RBM4_enrichment_R.7mers.txt	ENCFF108CRY	file_enrichment	RNA Bind-n-Seq	RBM4		Yes	Released	2022-07-14	ENCODE3			9360
chris-burge:RBM4_est_binding_frac.4mers.txt	ENCFF870FLG	file_library-fraction	RNA Bind-n-Seq	RBM4		Yes	Released	2022-07-14	ENCODE3			9361
chris-burge:RBM4_est_binding_frac.5mers.txt	ENCFF399HBQ	file_library-fraction	RNA Bind-n-Seq	RBM4		Yes	Released	2022-07-14	ENCODE3			9362
chris-burge:RBM4_est_binding_frac.6mers.txt	ENCFF395DTW	file_library-fraction	RNA Bind-n-Seq	RBM4		Yes	Released	2022-07-14	ENCODE3			9363
chris-burge:RBM4_est_binding_frac.7mers.txt	ENCFF290ZZD	file_library-fraction	RNA Bind-n-Seq	RBM4		Yes	Released	2022-07-14	ENCODE3			9364

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
RBM4.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
RBM4_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RALY_input.fastq.gz	ENCODE3
RBM4_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RALY_input.fastq.gz	ENCODE3
RBM4_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RALY_input.fastq.gz	ENCODE3
RBM4_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RALY_input.fastq.gz	ENCODE3
RBM4_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RALY_input.fastq.gz	ENCODE3
RBM4_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
RBM4_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM4_1300.fastq.gz,RBM4_20.fastq.gz,RBM4_320.fastq.gz,RBM4_5.fastq.gz,RBM4_80.fastq.gz,RALY_input.fastq.gz		ENCODE3
RBM4_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM4_1300.fastq.gz,RBM4_20.fastq.gz,RBM4_320.fastq.gz,RBM4_5.fastq.gz,RBM4_80.fastq.gz,RALY_input.fastq.gz		ENCODE3
RBM4_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM4_1300.fastq.gz,RBM4_20.fastq.gz,RBM4_320.fastq.gz,RBM4_5.fastq.gz,RBM4_80.fastq.gz,RALY_input.fastq.gz		ENCODE3
RBM4_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM4_1300.fastq.gz,RBM4_20.fastq.gz,RBM4_320.fastq.gz,RBM4_5.fastq.gz,RBM4_80.fastq.gz,RALY_input.fastq.gz		ENCODE3
RBM4_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM4_1300.fastq.gz,RBM4_20.fastq.gz,RBM4_320.fastq.gz,RBM4_5.fastq.gz,RBM4_80.fastq.gz,RALY_input.fastq.gz		ENCODE3
RBM4_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM4_1300.fastq.gz,RBM4_20.fastq.gz,RBM4_320.fastq.gz,RBM4_5.fastq.gz,RBM4_80.fastq.gz,RALY_input.fastq.gz		ENCODE3
RBM4_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM4_1300.fastq.gz,RBM4_20.fastq.gz,RBM4_320.fastq.gz,RBM4_5.fastq.gz,RBM4_80.fastq.gz,RALY_input.fastq.gz		ENCODE3
RBM4_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM4_1300.fastq.gz,RBM4_20.fastq.gz,RBM4_320.fastq.gz,RBM4_5.fastq.gz,RBM4_80.fastq.gz,RALY_input.fastq.gz		ENCODE3