Experiment Information (Status: Released)

RBP	RBFOX2
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	75

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
RBFOX2-mockPD	CN	40-40	0	RBFox2_0.fastq.gz
RBFOX2-1	RBNS	40-40	1	RBFox2_1.5.fastq.gz
RBFOX2-1100	RBNS	40-40	1100	RBFox2_1100.fastq.gz
RBFOX2-121	RBNS	40-40	121	RBFox2_121.fastq.gz
RBFOX2-14	RBNS	40-40	14	RBFox2_14.fastq.gz
RBFOX2-3300	RBNS	40-40	3300	RBFox2_3300.fastq.gz
RBFOX2-365	RBNS	40-40	365	RBFox2_365.fastq.gz
RBFOX2-4	RBNS	40-40	4	RBFox2_4.5.fastq.gz
RBFOX2-40	RBNS	40-40	40	RBFox2_40.fastq.gz
RBFOX2-9800	RBNS	40-40	9800	RBFox2_9800.fastq.gz
RBFOX2-input	CN	40-40	0	RBFox2_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:RBFOX2	ENCSR441HLP	experiment	RNA Bind-n-Seq	RBFOX2	DICER1-BGKcLV15-12	Yes	Released	2022-07-12	ENCODE3			8080
chris-burge:RBFOX2-input-cntl	ENCSR564NVP	experiment	RNA Bind-n-Seq	RBFOX2	EIF4E-BGKcLV15-34	Yes	Released	2022-07-12	ENCODE3			8081
chris-burge:RBFOX2-mockPD-cntl	ENCSR742YDK	experiment	RNA Bind-n-Seq	RBFOX2	CD3EAP-BGKcLV15-10	Yes	Released	2022-07-12	ENCODE3			8082
chris-burge:lib-RBFOX2-1	ENCLB218NUD	library	RNA Bind-n-Seq	RBFOX2	DICER1-BGKcLV15-11	Yes	Released	2022-07-12	ENCODE3			8418
chris-burge:lib-RBFOX2-2	ENCLB445ESN	library	RNA Bind-n-Seq	RBFOX2	EIF4A3-BGKcLV15-31	Yes	Released	2022-07-12	ENCODE3			8419
chris-burge:lib-RBFOX2-3	ENCLB103ROX	library	RNA Bind-n-Seq	RBFOX2	EIF2AK1-BGKcLV15-24	Yes	Released	2022-07-12	ENCODE3			8420
chris-burge:lib-RBFOX2-4	ENCLB930EXM	library	RNA Bind-n-Seq	RBFOX2	EIF4A3-BGKcLV15-32	Yes	Released	2022-07-12	ENCODE3			8421
chris-burge:lib-RBFOX2-5	ENCLB317IGQ	library	RNA Bind-n-Seq	RBFOX2	EIF2AK1-BGKcLV15-23	Yes	Released	2022-07-12	ENCODE3			8422
chris-burge:lib-RBFOX2-6	ENCLB302FFV	library	RNA Bind-n-Seq	RBFOX2	EIF2B3-BGKcLV15-28	Yes	Released	2022-07-12	ENCODE3			8423
chris-burge:lib-RBFOX2-7	ENCLB415HMQ	library	RNA Bind-n-Seq	RBFOX2	DICER1-BGKcLV15-12	Yes	Released	2022-07-12	ENCODE3			8424
chris-burge:lib-RBFOX2-8	ENCLB346IWS	library	RNA Bind-n-Seq	RBFOX2	EIF2B3-BGKcLV15-27	Yes	Released	2022-07-12	ENCODE3			8425
chris-burge:lib-RBFOX2-9	ENCLB714RKM	library	RNA Bind-n-Seq	RBFOX2	EIF4E-BGKcLV15-33	Yes	Released	2022-07-12	ENCODE3			8426
chris-burge:lib-RBFOX2-input-cntl	ENCLB468XCD	library	RNA Bind-n-Seq	RBFOX2	EIF4E-BGKcLV15-34	Yes	Released	2022-07-12	ENCODE3			8427
chris-burge:lib-RBFOX2-mockPD-cntl	ENCLB115BXK	library	RNA Bind-n-Seq	RBFOX2	CD3EAP-BGKcLV15-10	Yes	Released	2022-07-12	ENCODE3			8428
chris-burge:RBFox2_365.fastq.gz	ENCFF002DHF	file_fastq	RNA Bind-n-Seq	RBFOX2	EIF2B3-BGKcLV15-28	Yes	Released	2022-07-14	ENCODE3			9683
chris-burge:RBFox2_1100.fastq.gz	ENCFF002DHA	file_fastq	RNA Bind-n-Seq	RBFOX2	DICER1-BGKcLV15-12	Yes	Released	2022-07-14	ENCODE3			9684
chris-burge:RBFox2_3300.fastq.gz	ENCFF002DHE	file_fastq	RNA Bind-n-Seq	RBFOX2	EIF2B3-BGKcLV15-27	Yes	Released	2022-07-14	ENCODE3			9685
chris-burge:RBFox2_121.fastq.gz	ENCFF002DHB	file_fastq	RNA Bind-n-Seq	RBFOX2	EIF2AK1-BGKcLV15-23	Yes	Released	2022-07-14	ENCODE3			9686
chris-burge:RBFox2_14.fastq.gz	ENCFF002DHC	file_fastq	RNA Bind-n-Seq	RBFOX2	EIF2AK1-BGKcLV15-24	Yes	Released	2022-07-14	ENCODE3			9687
chris-burge:RBFox2_40.fastq.gz	ENCFF002DHG	file_fastq	RNA Bind-n-Seq	RBFOX2	EIF4A3-BGKcLV15-32	Yes	Released	2022-07-14	ENCODE3			9688
chris-burge:RBFox2_4.5.fastq.gz	ENCFF002DHH	file_fastq	RNA Bind-n-Seq	RBFOX2	EIF4A3-BGKcLV15-31	Yes	Released	2022-07-14	ENCODE3			9689
chris-burge:RBFox2_1.5.fastq.gz	ENCFF002DHD	file_fastq	RNA Bind-n-Seq	RBFOX2	DICER1-BGKcLV15-11	Yes	Released	2022-07-14	ENCODE3			9690
chris-burge:RBFox2_9800.fastq.gz	ENCFF002DHI	file_fastq	RNA Bind-n-Seq	RBFOX2	EIF4E-BGKcLV15-33	Yes	Released	2022-07-14	ENCODE3			9691
chris-burge:RBFOX2_est_binding_frac.5mers.txt	ENCFF002DFH	file_library-fraction	RNA Bind-n-Seq	RBFOX2	DICER1-BGKcLV15-12	Yes	Released	2022-07-14	ENCODE3			9692
chris-burge:RBFOX2_est_binding_frac.6mers.txt	ENCFF002DFI	file_library-fraction	RNA Bind-n-Seq	RBFOX2	DICER1-BGKcLV15-12	Yes	Released	2022-07-14	ENCODE3			9693
chris-burge:RBFOX2_est_binding_frac.7mers.txt	ENCFF002DFJ	file_library-fraction	RNA Bind-n-Seq	RBFOX2	DICER1-BGKcLV15-12	Yes	Released	2022-07-14	ENCODE3			9694
chris-burge:RBFOX2_enrichment_R.5mers.txt	ENCFF002DFE	file_enrichment	RNA Bind-n-Seq	RBFOX2	DICER1-BGKcLV15-12	Yes	Released	2022-07-14	ENCODE3			9695
chris-burge:RBFOX2_enrichment_R.6mers.txt	ENCFF002DFF	file_enrichment	RNA Bind-n-Seq	RBFOX2	DICER1-BGKcLV15-12	Yes	Released	2022-07-14	ENCODE3			9696
chris-burge:RBFOX2_enrichment_R.7mers.txt	ENCFF002DFG	file_enrichment	RNA Bind-n-Seq	RBFOX2	DICER1-BGKcLV15-12	Yes	Released	2022-07-14	ENCODE3			9697
chris-burge:RBFox2_input.fastq.gz	ENCFF002DHJ	file_fastq	RNA Bind-n-Seq	RBFOX2	EIF4E-BGKcLV15-34	Yes	Released	2022-07-14	ENCODE3			9698
chris-burge:RBFox2_0.fastq.gz	ENCFF002DGZ	file_fastq	RNA Bind-n-Seq	RBFOX2	CD3EAP-BGKcLV15-10	Yes	Released	2022-07-14	ENCODE3			9699
chris-burge:HepG2.with_motif.RBFOX2.bed.gz	ENCFF832GIY	file_bed	RNA Bind-n-Seq	RBFOX2	DICER1-BGKcLV15-12	Yes	Released	2022-07-14	ENCODE3			9740
chris-burge:K562.with_motif.RBFOX2.bed.gz	ENCFF499CES	file_bed	RNA Bind-n-Seq	RBFOX2	DICER1-BGKcLV15-12	Yes	Released	2022-07-14	ENCODE3			9741

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
RBFOX2.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
RBFox2_0.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
RBFox2_1.5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBFox2_0.fastq.gz,RBFox2_input.fastq.gz	ENCODE3
RBFox2_1100.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBFox2_0.fastq.gz,RBFox2_input.fastq.gz	ENCODE3
RBFox2_121.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBFox2_0.fastq.gz,RBFox2_input.fastq.gz	ENCODE3
RBFox2_14.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBFox2_0.fastq.gz,RBFox2_input.fastq.gz	ENCODE3
RBFox2_3300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBFox2_0.fastq.gz,RBFox2_input.fastq.gz	ENCODE3
RBFox2_365.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBFox2_0.fastq.gz,RBFox2_input.fastq.gz	ENCODE3
RBFox2_4.5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBFox2_0.fastq.gz,RBFox2_input.fastq.gz	ENCODE3
RBFox2_40.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBFox2_0.fastq.gz,RBFox2_input.fastq.gz	ENCODE3
RBFox2_9800.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBFox2_0.fastq.gz,RBFox2_input.fastq.gz	ENCODE3
RBFox2_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
RBFOX2_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBFox2_0.fastq.gz,RBFox2_1.5.fastq.gz,RBFox2_1100.fastq.gz,RBFox2_121.fastq.gz,RBFox2_14.fastq.gz,RBFox2_3300.fastq.gz,RBFox2_365.fastq.gz,RBFox2_4.5.fastq.gz,RBFox2_40.fastq.gz,RBFox2_9800.fastq.gz,RBFox2_input.fastq.gz		ENCODE3
RBFOX2_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBFox2_0.fastq.gz,RBFox2_1.5.fastq.gz,RBFox2_1100.fastq.gz,RBFox2_121.fastq.gz,RBFox2_14.fastq.gz,RBFox2_3300.fastq.gz,RBFox2_365.fastq.gz,RBFox2_4.5.fastq.gz,RBFox2_40.fastq.gz,RBFox2_9800.fastq.gz,RBFox2_input.fastq.gz		ENCODE3
RBFOX2_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBFox2_0.fastq.gz,RBFox2_1.5.fastq.gz,RBFox2_1100.fastq.gz,RBFox2_121.fastq.gz,RBFox2_14.fastq.gz,RBFox2_3300.fastq.gz,RBFox2_365.fastq.gz,RBFox2_4.5.fastq.gz,RBFox2_40.fastq.gz,RBFox2_9800.fastq.gz,RBFox2_input.fastq.gz		ENCODE3
RBFOX2_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBFox2_0.fastq.gz,RBFox2_1.5.fastq.gz,RBFox2_1100.fastq.gz,RBFox2_121.fastq.gz,RBFox2_14.fastq.gz,RBFox2_3300.fastq.gz,RBFox2_365.fastq.gz,RBFox2_4.5.fastq.gz,RBFox2_40.fastq.gz,RBFox2_9800.fastq.gz,RBFox2_input.fastq.gz		ENCODE3
RBFOX2_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBFox2_0.fastq.gz,RBFox2_1.5.fastq.gz,RBFox2_1100.fastq.gz,RBFox2_121.fastq.gz,RBFox2_14.fastq.gz,RBFox2_3300.fastq.gz,RBFox2_365.fastq.gz,RBFox2_4.5.fastq.gz,RBFox2_40.fastq.gz,RBFox2_9800.fastq.gz,RBFox2_input.fastq.gz		ENCODE3
RBFOX2_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBFox2_0.fastq.gz,RBFox2_1.5.fastq.gz,RBFox2_1100.fastq.gz,RBFox2_121.fastq.gz,RBFox2_14.fastq.gz,RBFox2_3300.fastq.gz,RBFox2_365.fastq.gz,RBFox2_4.5.fastq.gz,RBFox2_40.fastq.gz,RBFox2_9800.fastq.gz,RBFox2_input.fastq.gz		ENCODE3
HepG2.with_motif.RBFOX2.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	RBFOX2_enrichment_R.5mers.txt,204.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3
K562.with_motif.RBFOX2.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	RBFOX2_enrichment_R.5mers.txt,676.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3