Experiment Information (Status: Released)

RBP	EWSR1
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	32

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
EWSR1-mockPD	CN	20-20	0	EWSR1_0.fastq.gz
EWSR1-1300	RBNS	20-20	1300	EWSR1_1300.fastq.gz
EWSR1-20	RBNS	20-20	20	EWSR1_20.fastq.gz
EWSR1-320	RBNS	20-20	320	EWSR1_320.fastq.gz
EWSR1-5	RBNS	20-20	5	EWSR1_5.fastq.gz
EWSR1-80	RBNS	20-20	80	EWSR1_80.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:EWSR1	ENCSR063HQO	experiment	RNA Bind-n-Seq	EWSR1		Yes	Released	2022-07-12	ENCODE3			8010
chris-burge:EWSR1-mockPD-cntl	ENCSR015TOO	experiment	RNA Bind-n-Seq	EWSR1		Yes	Released	2022-07-12	ENCODE3			8011
chris-burge:lib-EWSR1-1	ENCLB481HOL	library	RNA Bind-n-Seq	EWSR1		Yes	Released	2022-07-12	ENCODE3			8210
chris-burge:lib-EWSR1-2	ENCLB221FHP	library	RNA Bind-n-Seq	EWSR1		Yes	Released	2022-07-12	ENCODE3			8211
chris-burge:lib-EWSR1-3	ENCLB522KLY	library	RNA Bind-n-Seq	EWSR1		Yes	Released	2022-07-12	ENCODE3			8212
chris-burge:lib-EWSR1-4	ENCLB052YEQ	library	RNA Bind-n-Seq	EWSR1		Yes	Released	2022-07-12	ENCODE3			8213
chris-burge:lib-EWSR1-5	ENCLB275SND	library	RNA Bind-n-Seq	EWSR1		Yes	Released	2022-07-12	ENCODE3			8214
chris-burge:lib-EWSR1-mockPD-cntl	ENCLB940GHY	library	RNA Bind-n-Seq	EWSR1		Yes	Released	2022-07-12	ENCODE3			8215
chris-burge:EWSR1_0.fastq.gz	ENCFF160WCN	file_fastq	RNA Bind-n-Seq	EWSR1		Yes	Released	2022-07-14	ENCODE3			8677
chris-burge:EWSR1_1300.fastq.gz	ENCFF352GUJ	file_fastq	RNA Bind-n-Seq	EWSR1		Yes	Released	2022-07-14	ENCODE3			8678
chris-burge:EWSR1_20.fastq.gz	ENCFF690OPZ	file_fastq	RNA Bind-n-Seq	EWSR1		Yes	Released	2022-07-14	ENCODE3			8679
chris-burge:EWSR1_320.fastq.gz	ENCFF846YUO	file_fastq	RNA Bind-n-Seq	EWSR1		Yes	Released	2022-07-14	ENCODE3			8680
chris-burge:EWSR1_5.fastq.gz	ENCFF806UZR	file_fastq	RNA Bind-n-Seq	EWSR1		Yes	Released	2022-07-14	ENCODE3			8681
chris-burge:EWSR1_80.fastq.gz	ENCFF561OTA	file_fastq	RNA Bind-n-Seq	EWSR1		Yes	Released	2022-07-14	ENCODE3			8682
chris-burge:EWSR1_enrichment_R_to_0nM.4mers.txt	ENCFF589AOW	file_enrichment	RNA Bind-n-Seq	EWSR1		Yes	Released	2022-07-14	ENCODE3			9088
chris-burge:EWSR1_enrichment_R_to_0nM.5mers.txt	ENCFF100OEJ	file_enrichment	RNA Bind-n-Seq	EWSR1		Yes	Released	2022-07-14	ENCODE3			9089
chris-burge:EWSR1_enrichment_R_to_0nM.6mers.txt	ENCFF364MOL	file_enrichment	RNA Bind-n-Seq	EWSR1		Yes	Released	2022-07-14	ENCODE3			9090
chris-burge:EWSR1_est_binding_frac.4mers.ordered_by_enrichment_to_0nM.txt	ENCFF127WKQ	file_library-fraction	RNA Bind-n-Seq	EWSR1		Yes	Released	2022-07-14	ENCODE3			9091
chris-burge:EWSR1_est_binding_frac.5mers.ordered_by_enrichment_to_0nM.txt	ENCFF500XUN	file_library-fraction	RNA Bind-n-Seq	EWSR1		Yes	Released	2022-07-14	ENCODE3			9092
chris-burge:EWSR1_est_binding_frac.6mers.ordered_by_enrichment_to_0nM.txt	ENCFF484JBC	file_library-fraction	RNA Bind-n-Seq	EWSR1		Yes	Released	2022-07-14	ENCODE3			9093
chris-burge:K562.with_motif.EWSR1.bed.gz	ENCFF283ODT	file_bed	RNA Bind-n-Seq	EWSR1		Yes	Released	2022-07-14	ENCODE3			9716

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
EWSR1.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
EWSR1_0.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
EWSR1_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		EWSR1_0.fastq.gz	ENCODE3
EWSR1_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		EWSR1_0.fastq.gz	ENCODE3
EWSR1_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		EWSR1_0.fastq.gz	ENCODE3
EWSR1_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		EWSR1_0.fastq.gz	ENCODE3
EWSR1_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		EWSR1_0.fastq.gz	ENCODE3
EWSR1_enrichment_R_to_0nM.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	EWSR1_0.fastq.gz,EWSR1_1300.fastq.gz,EWSR1_20.fastq.gz,EWSR1_320.fastq.gz,EWSR1_5.fastq.gz,EWSR1_80.fastq.gz		ENCODE3
EWSR1_est_binding_frac.4mers.ordered_by_enrichment_to_0nM.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	EWSR1_0.fastq.gz,EWSR1_1300.fastq.gz,EWSR1_20.fastq.gz,EWSR1_320.fastq.gz,EWSR1_5.fastq.gz,EWSR1_80.fastq.gz		ENCODE3
EWSR1_enrichment_R_to_0nM.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	EWSR1_0.fastq.gz,EWSR1_1300.fastq.gz,EWSR1_20.fastq.gz,EWSR1_320.fastq.gz,EWSR1_5.fastq.gz,EWSR1_80.fastq.gz		ENCODE3
EWSR1_est_binding_frac.5mers.ordered_by_enrichment_to_0nM.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	EWSR1_0.fastq.gz,EWSR1_1300.fastq.gz,EWSR1_20.fastq.gz,EWSR1_320.fastq.gz,EWSR1_5.fastq.gz,EWSR1_80.fastq.gz		ENCODE3
EWSR1_enrichment_R_to_0nM.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	EWSR1_0.fastq.gz,EWSR1_1300.fastq.gz,EWSR1_20.fastq.gz,EWSR1_320.fastq.gz,EWSR1_5.fastq.gz,EWSR1_80.fastq.gz		ENCODE3
EWSR1_est_binding_frac.6mers.ordered_by_enrichment_to_0nM.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	EWSR1_0.fastq.gz,EWSR1_1300.fastq.gz,EWSR1_20.fastq.gz,EWSR1_320.fastq.gz,EWSR1_5.fastq.gz,EWSR1_80.fastq.gz		ENCODE3
K562.with_motif.EWSR1.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	EWSR1_enrichment_R_to_0nM.5mers.txt,440.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3