RBM12-BGKcLV46-53_S23_L001_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set77/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3387 | NovaSeq6000 | 100 | paired-ended | 1 | | | | NT-BGKcLV46-1_S1_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV46-2_S2_L001_R1_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 32172 |
RBM12-BGKcLV46-53_S23_L001_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set77/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3387 | NovaSeq6000 | 100 | paired-ended | 2 | | | | NT-BGKcLV46-1_S1_L001_R2_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV46-2_S2_L001_R2_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 32222 |
RBM12-BGKcLV46-53_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 3387 | | | | | GRCh38 | V40 | RBM12-BGKcLV46-53_S23_L001_R1_001.filtered.trimmed.paired.fastq.gz,RBM12-BGKcLV46-53_S23_L001_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 32272 |
RBM12-BGKcLV46-53_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3387 | | | | | GRCh38 | V40 | RBM12-BGKcLV46-53_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 32322 |
RBM12-BGKcLV46-53_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3387 | | | | | GRCh38 | V40 | RBM12-BGKcLV46-53_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 32372 |
RBM12-BGKcLV46-53_Signal.Unique.strand-.bw | ENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 3387 | | | | | GRCh38 | V40 | RBM12-BGKcLV46-53_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 32422 |
RBM12-BGKcLV46-53_Signal.Unique.strand+.bw | ENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 3387 | | | | | GRCh38 | V40 | RBM12-BGKcLV46-53_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 32472 |
RBM12-BGKcLV46-53_quant.sf | ENCODE_DATA/set77/salmon_ENCORE2_file_links | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 3387 | | | | | GRCh38 | V40 | RBM12-BGKcLV46-53_S23_L001_R1_001.filtered.trimmed.paired.fastq.gz,RBM12-BGKcLV46-53_S23_L001_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 32522 |
RBM12-BGKcLV46-54_S24_L001_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set77/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3388 | NovaSeq6000 | 100 | paired-ended | 1 | | | | NT-BGKcLV46-1_S1_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV46-2_S2_L001_R1_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 32173 |
RBM12-BGKcLV46-54_S24_L001_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set77/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3388 | NovaSeq6000 | 100 | paired-ended | 2 | | | | NT-BGKcLV46-1_S1_L001_R2_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV46-2_S2_L001_R2_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 32223 |
RBM12-BGKcLV46-54_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 3388 | | | | | GRCh38 | V40 | RBM12-BGKcLV46-54_S24_L001_R1_001.filtered.trimmed.paired.fastq.gz,RBM12-BGKcLV46-54_S24_L001_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 32273 |
RBM12-BGKcLV46-54_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3388 | | | | | GRCh38 | V40 | RBM12-BGKcLV46-54_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 32323 |
RBM12-BGKcLV46-54_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3388 | | | | | GRCh38 | V40 | RBM12-BGKcLV46-54_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 32373 |
RBM12-BGKcLV46-54_Signal.Unique.strand-.bw | ENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 3388 | | | | | GRCh38 | V40 | RBM12-BGKcLV46-54_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 32423 |
RBM12-BGKcLV46-54_Signal.Unique.strand+.bw | ENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 3388 | | | | | GRCh38 | V40 | RBM12-BGKcLV46-54_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 32473 |
RBM12-BGKcLV46-54_quant.sf | ENCODE_DATA/set77/salmon_ENCORE2_file_links | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 3388 | | | | | GRCh38 | V40 | RBM12-BGKcLV46-54_S24_L001_R1_001.filtered.trimmed.paired.fastq.gz,RBM12-BGKcLV46-54_S24_L001_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 32523 |