non-target      CRISPR in HepG2      Batch: BGHcLV49

General Information

List KD experiments controlled by BGHcLV49-1 and BGHcLV49-2


NT-BGHcLV49-1,NT-BGHcLV49-2:No KD experiments controlled by NT-BGHcLV49-1 and NT-BGHcLV49-2 are available on the database

NT-BGHcLV49-1B,NT-BGHcLV49-2B:No KD experiments controlled by NT-BGHcLV49-1B and NT-BGHcLV49-2B are available on the database




Experiment Information (Status: Sequenced)
BGHcLV49-1BGHcLV49-2
idx00
TRCN#_or_BGC#
shRNA_or_gRNA_sequence
PAM
Namenon-targetnon-target
Sample_IDBGHcLV49-1BGHcLV49-2
transduction_Date6/6/256/6/25
daysD6D6
RBP_namenon-targetnon-target
qPCR_result
Ave_qPCR
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc05199
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID98819882




Western Blot
Western Blot info was not avaliable




Experiment Status
BGHcLV49-1BGHcLV49-1BGHcLV49-2BGHcLV49-2
Sample_IDBGHcLV49-1BGHcLV49-1BGHcLV49-2BGHcLV49-2
Sample Name
Sample NameNT-BGHcLV49-1NT-BGHcLV49-1NT-BGHcLV49-2NT-BGHcLV49-2
RBPnon-targetnon-targetnon-targetnon-target
Cell_LineHepG2HepG2HepG2HepG2
Exp UID
StatusSequencedSequencedSequencedSequenced
Status_date2025-10-302025-10-302025-10-302025-10-30
ProjectENCORE2ENCORE2ENCORE2ENCORE2
Note
ID14326144461432714447




Library-Prep Information
BGHcLV49-1BGHcLV49-1BGHcLV49-2BGHcLV49-2
Sample #23692470
Sample NameNT-BGHcLV49-1NT-BGHcLV49-1BNT-BGHcLV49-2NT-BGHcLV49-2B
Sample_Name_Alias
Index Well PositionA04G09B04H09
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2025-08-202025-09-112025-08-202025-09-11
Lib_IDLib-250820Lib-250911Lib-250820Lib-250911
Tecan_Location
Tecan
Tecan_date
Size_bp262279263271
Peak_Molarity60.7098.2089.4093.40
libSampleQC_DNA_Well
RIN
libSample_RNA_Well
SampleQC_methodTapeStation_2022TapeStation_2022TapeStation_2022TapeStation_2022
SampleQC_date2025-09-102025-09-152025-09-102025-09-15
Sample_IDBGHcLV49-1BGHcLV49-1BGHcLV49-2BGHcLV49-2
RBPNTNTNTNT
Batch_IDBGHcLV49BGHcLV49BGHcLV49BGHcLV49
WB_result0.0000.0000.0000.000
Library DescriptionTruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequenceSendToSequenceSendToSequence
ProjectENCORE2ENCORE2ENCORE2ENCORE2
ID4768481447694815




Sequencing Information
BGHcLV49-1BGHcLV49-1BGHcLV49-2BGHcLV49-2
Sample_IDBGHcLV49-1BGHcLV49-1BGHcLV49-2BGHcLV49-2
Sample NameNT-BGHcLV49-1NT-BGHcLV49-1BNT-BGHcLV49-2NT-BGHcLV49-2B
Pool IDPool-250916Pool-250916Pool-250916Pool-250916
LocalServer_folder
total_reads0000
total_aligned_reads0000
unique_aligned_reads0000
percent_uniqueAligned
correlation_replicates
spikein_reads0000
percent_spikeins
original_ReadLength
QC_StatusReadyToQCReadyToQCReadyToQCReadyToQC
ID3495353934963540




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database