PPIA-BG293LV06-43_S45_L002_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set71/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3039 | NovaSeq6000 | 100 | paired-ended | 1 | | | | NT-BG293LV06-1merged_S1_L002_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2merged_S2_L002_R1_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 29351 |
PPIA-BG293LV06-43_S45_L002_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set71/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3039 | NovaSeq6000 | 100 | paired-ended | 2 | | | | NT-BG293LV06-1merged_S1_L002_R2_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2merged_S2_L002_R2_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 29415 |
PPIA-BG293LV06-43_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 3039 | | | | | GRCh38 | V40 | PPIA-BG293LV06-43_S45_L002_R1_001.filtered.trimmed.paired.fastq.gz,PPIA-BG293LV06-43_S45_L002_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 29480 |
PPIA-BG293LV06-43_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3039 | | | | | GRCh38 | V40 | PPIA-BG293LV06-43_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 29544 |
PPIA-BG293LV06-43_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3039 | | | | | GRCh38 | V40 | PPIA-BG293LV06-43_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 29608 |
PPIA-BG293LV06-43_Signal.Unique.strand-.bw | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 3039 | | | | | GRCh38 | V40 | PPIA-BG293LV06-43_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 29672 |
PPIA-BG293LV06-43_quant.sf | ENCODE_DATA/set71/salmon_ENCORE2_file_links | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 3039 | | | | | GRCh38 | V40 | PPIA-BG293LV06-43_S45_L002_R1_001.filtered.trimmed.paired.fastq.gz,PPIA-BG293LV06-43_S45_L002_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 29736 |
PPIA-BG293LV06-44_S46_L002_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set71/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3040 | NovaSeq6000 | 100 | paired-ended | 1 | | | | NT-BG293LV06-1merged_S1_L002_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2merged_S2_L002_R1_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 29352 |
PPIA-BG293LV06-44_S46_L002_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set71/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3040 | NovaSeq6000 | 100 | paired-ended | 2 | | | | NT-BG293LV06-1merged_S1_L002_R2_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2merged_S2_L002_R2_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 29416 |
PPIA-BG293LV06-44_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 3040 | | | | | GRCh38 | V40 | PPIA-BG293LV06-44_S46_L002_R1_001.filtered.trimmed.paired.fastq.gz,PPIA-BG293LV06-44_S46_L002_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 29481 |
PPIA-BG293LV06-44_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3040 | | | | | GRCh38 | V40 | PPIA-BG293LV06-44_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 29545 |
PPIA-BG293LV06-44_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3040 | | | | | GRCh38 | V40 | PPIA-BG293LV06-44_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 29609 |
PPIA-BG293LV06-44_Signal.Unique.strand-.bw | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 3040 | | | | | GRCh38 | V40 | PPIA-BG293LV06-44_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 29673 |
PPIA-BG293LV06-44_quant.sf | ENCODE_DATA/set71/salmon_ENCORE2_file_links | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 3040 | | | | | GRCh38 | V40 | PPIA-BG293LV06-44_S46_L002_R1_001.filtered.trimmed.paired.fastq.gz,PPIA-BG293LV06-44_S46_L002_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 29737 |