ENCORE eCLIP:658

RPS5 eCLIP in HepG2

Experiment Information (Status: Revoked)

	658	658-control
Exp_UID	658	658
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR307WAE	ENCSR828MEJ
ENCODE_alias	gene-yeo:658	gene-yeo:658-control
RBP	RPS5	RPS5
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB780TEB	ENCAB780TEB
Antibody	A304-010A	A304-010A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Revoked	Revoked
Project	ENCODE3	ENCODE3
ID	345	368

Replicate Information


Rep_UID	655_01	655_02	655_INPUT
Exp UID	658	658	658
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB955VYX	ENCLB034FDD	ENCLB259QPU
ENCODE_alias	gene-yeo:655_01	gene-yeo:655_02	gene-yeo:655_INPUT
Biosample Name	HepG2_091615	HepG2_012016	HepG2_091615
Biosample_ENCODE_Accession	ENCBS621TAB	ENCBS074YUC	ENCBS621TAB
Biosample_ENCODE_Alias	gene-yeo:HepG2_091615	gene-yeo:HepG2_012016	gene-yeo:HepG2_091615
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2015-09-16	2016-01-20	2015-09-16
Culture_End_Date	2015-10-09	2016-02-17	2015-10-09
Passage	3	4	3

QC Stats

Experiment QC

	658	658-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	655_01	655_02	655_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	655_01	655_02	655_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A04	A03	none
inline_barcode_2	F05	G07	none
i5_barcode	505	505	506
i7_barcode	706	706	705

Sequencing Information


Rep_UID	655_01	655_02	655_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information No files are available for eCLIP experiment (Exp_UID=)658

Data Submission Information

Files

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	Status	Project
gene-yeo:4202_CLIP1_rep1.vs.4202_CLIP2_rep2.sorted.nh.narrowPeak.gz	ENCFF513FDO	file_finalPeaks	eCLIP	4202	Released	ENCODE4
gene-yeo:4030_CLIP1_rep1.vs.4030_CLIP2_rep2.sorted.nh.bb	ENCFF543KQW	file_finalPeaks_bb	eCLIP	4202	Released	ENCODE4
gene-yeo:4225_CLIP1_rep1.vs.4225_CLIP2_rep2.sorted.nh.narrowPeak.gz	ENCFF125IDN	file_finalPeaks	eCLIP	4225	Released	ENCODE4
gene-yeo:4036_CLIP1_rep1.vs.4036_CLIP2_rep2.sorted.nh.bb	ENCFF931EOG	file_finalPeaks_bb	eCLIP	4225	Released	ENCODE4