ZNF622      eCLIP in K562

Experiment Information (Status: Released)
570570-control
Exp_UID570570
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR657TZZENCSR594RFP
ENCODE_aliasgene-yeo:570gene-yeo:570-control
RBPZNF622ZNF622
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB041OEQENCAB041OEQ
AntibodyA304-075AA304-075A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID285315




Replicate Information
Rep_UID570_01570_02570_INPUT
Exp UID570570570
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB449TDIENCLB502FFEENCLB389OYK
ENCODE_aliasgene-yeo:570_01gene-yeo:570_02gene-yeo:570_INPUT
Biosample NameK562_081815K562_070715K562_081815
Biosample_ENCODE_AccessionENCBS175JIHENCBS517UIRENCBS175JIH
Biosample_ENCODE_Aliasgene-yeo:K562_081815gene-yeo:K562_070715gene-yeo:K562_081815
Cell_LineK562K562K562
Culture_Start_Date2015-08-182015-07-072015-08-18
Culture_End_Date2015-09-082015-08-042015-09-08
Passage555




QC Stats
Experiment QC
570570-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID570_01570_02570_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID570_01570_02570_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A04A03none
inline_barcode_2F05G07none
i5_barcode502502501
i7_barcode704704703




Sequencing Information
Rep_UID570_01570_02570_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/570.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz570final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
570.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz570final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=570)