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AGGF1
eCLIP
in HepG2
Experiment Information
Sequencing Information
File Information
Data Submission
Experiment Information
Replicate Information
QC Stats
Experiment Information (Status:
Released
)
543
543-control
Exp_UID
543
543
RBPARK_Exp_name
ENCODE_ACCESSION
ENCSR543TPH
ENCSR182AEG
ENCODE_alias
gene-yeo:543
gene-yeo:543-control
RBP
AGGF1
AGGF1
Cell_Line
HepG2
HepG2
Batch
Exp_type
eCLIP
control
ENCODE_Antibody_ID
ENCAB191KLA
ENCAB191KLA
Antibody
A303-634A
A303-634A
Lot_num
1
1
crosslinking_method
ultraviolet irradiation
ultraviolet irradiation
queried_RNP_size_range
175-300
175-300
Self_consistency_hg38
rescue_GRCh38
Status
Released
Released
Project
ENCODE3
ENCODE3
ID
237
263
Replicate Information
Rep_UID
543_INPUT
543_01
543_02
Exp UID
543
543
543
Replicate_type
control
rep1
rep2
ENCODE_ACCESSION
ENCLB327UQW
ENCLB998IUB
ENCLB683HLU
ENCODE_alias
gene-yeo:543_INPUT
gene-yeo:543_01
gene-yeo:543_02
Biosample Name
HepG2_061215
HepG2_061215
HepG2_081815
Biosample_ENCODE_Accession
ENCBS308ZPA
ENCBS308ZPA
ENCBS881CIF
Biosample_ENCODE_Alias
gene-yeo:HepG2_061215
gene-yeo:HepG2_061215
gene-yeo:HepG2_081815
Cell_Line
HepG2
HepG2
HepG2
Culture_Start_Date
2015-06-12
2015-06-12
2015-08-18
Culture_End_Date
2015-06-30
2015-06-30
2015-09-10
Passage
3
3
4
QC Stats
Experiment QC
543
543-control
Self_consistency_hg38
rescue_GRCh38
Replicate QC
Rep_UID
543_INPUT
543_01
543_02
eCT
Usable_reads
Entropy_hg38
Library-Prep
Sequencing
Library-Prep Information
Rep_UID
543_INPUT
543_01
543_02
library_size_selection_method
agarose gel extraction
agarose gel extraction
agarose gel extraction
strand_specificity
reverse
reverse
reverse
inline_barcode_1
none
A04
A03
inline_barcode_2
none
F05
G07
i5_barcode
506
505
505
i7_barcode
705
706
706
Sequencing Information
Rep_UID
543_INPUT
543_01
543_02
seq_read_type
paired-ended
paired-ended
paired-ended
read_length
50
50
50
machine
flowcell
lane
File Information
GRCh38
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
GRCh38/543.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
543
final_peaks
peaks
eCLIP
GRCh38
hg19
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
543.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
543
final_peaks
peaks
eCLIP
hg19
Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=543)
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