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TROVE2
eCLIP
in HepG2
Experiment Information
Sequencing Information
File Information
Data Submission
Experiment Information
Replicate Information
QC Stats
Experiment Information (Status:
Released
)
503
503-control
Exp_UID
503
503
RBPARK_Exp_name
ENCODE_ACCESSION
ENCSR993FMY
ENCSR619LRH
ENCODE_alias
gene-yeo:503
gene-yeo:503-control
RBP
TROVE2
TROVE2
Cell_Line
HepG2
HepG2
Batch
Exp_type
eCLIP
control
ENCODE_Antibody_ID
ENCAB703EAU
ENCAB703EAU
Antibody
A303-692A
A303-692A
Lot_num
1
1
crosslinking_method
ultraviolet irradiation
ultraviolet irradiation
queried_RNP_size_range
175-300
175-300
Self_consistency_hg38
rescue_GRCh38
Status
Released
Released
Project
ENCODE3
ENCODE3
ID
276
306
Replicate Information
Rep_UID
503_01
503_02
503_INPUT
Exp UID
503
503
503
Replicate_type
rep1
rep2
control
ENCODE_ACCESSION
ENCLB860LDN
ENCLB903OGC
ENCLB755AXP
ENCODE_alias
gene-yeo:503_01
gene-yeo:503_02
gene-yeo:503_INPUT
Biosample Name
HepG2_081815
HepG2_061215
HepG2_081815
Biosample_ENCODE_Accession
ENCBS881CIF
ENCBS308ZPA
ENCBS881CIF
Biosample_ENCODE_Alias
gene-yeo:HepG2_081815
gene-yeo:HepG2_061215
gene-yeo:HepG2_081815
Cell_Line
HepG2
HepG2
HepG2
Culture_Start_Date
2015-08-18
2015-06-12
2015-08-18
Culture_End_Date
2015-09-10
2015-06-30
2015-09-10
Passage
4
3
4
QC Stats
Experiment QC
503
503-control
Self_consistency_hg38
rescue_GRCh38
Replicate QC
Rep_UID
503_01
503_02
503_INPUT
eCT
Usable_reads
Entropy_hg38
Library-Prep
Sequencing
Library-Prep Information
Rep_UID
503_01
503_02
503_INPUT
library_size_selection_method
agarose gel extraction
agarose gel extraction
agarose gel extraction
strand_specificity
reverse
reverse
reverse
inline_barcode_1
A01
C01
none
inline_barcode_2
B06
D08fixed
none
i5_barcode
505
505
506
i7_barcode
702
702
701
Sequencing Information
Rep_UID
503_01
503_02
503_INPUT
seq_read_type
paired-ended
paired-ended
paired-ended
read_length
50
50
50
machine
flowcell
lane
File Information
GRCh38
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
GRCh38/503.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
503
final_peaks
peaks
eCLIP
GRCh38
hg19
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
503.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
503
final_peaks
peaks
eCLIP
hg19
Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=503)
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