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GPKOW
eCLIP
in K562
Experiment Information
Sequencing Information
File Information
Data Submission
Experiment Information
Replicate Information
QC Stats
Experiment Information (Status:
Released
)
450
450-control
Exp_UID
450
450
RBPARK_Exp_name
ENCODE_ACCESSION
ENCSR647CLF
ENCSR393STP
ENCODE_alias
gene-yeo:450
gene-yeo:450-control
RBP
GPKOW
GPKOW
Cell_Line
K562
K562
Batch
Exp_type
eCLIP
control
ENCODE_Antibody_ID
ENCAB445RKH
ENCAB445RKH
Antibody
GTX117716
GTX117716
Lot_num
40289
40289
crosslinking_method
ultraviolet irradiation
ultraviolet irradiation
queried_RNP_size_range
175-300
175-300
Self_consistency_hg38
rescue_GRCh38
Status
Released
Released
Project
ENCODE3
ENCODE3
ID
181
207
Replicate Information
Rep_UID
450_01
450_02
450_INPUT
Exp UID
450
450
450
Replicate_type
rep1
rep2
control
ENCODE_ACCESSION
ENCLB850EER
ENCLB288CKF
ENCLB105SXR
ENCODE_alias
gene-yeo:450_01
gene-yeo:450_02
gene-yeo:450_INPUT
Biosample Name
K562_070715
K562_061215
K562_070715
Biosample_ENCODE_Accession
ENCBS517UIR
ENCBS318IMK
ENCBS517UIR
Biosample_ENCODE_Alias
gene-yeo:K562_070715
gene-yeo:K562_061215
gene-yeo:K562_070715
Cell_Line
K562
K562
K562
Culture_Start_Date
2015-07-07
2015-06-12
2015-07-07
Culture_End_Date
2015-08-04
2015-06-30
2015-08-04
Passage
5
4
5
QC Stats
Experiment QC
450
450-control
Self_consistency_hg38
rescue_GRCh38
Replicate QC
Rep_UID
450_01
450_02
450_INPUT
eCT
Usable_reads
Entropy_hg38
Library-Prep
Sequencing
Library-Prep Information
Rep_UID
450_01
450_02
450_INPUT
library_size_selection_method
agarose gel extraction
agarose gel extraction
agarose gel extraction
strand_specificity
reverse
reverse
reverse
inline_barcode_1
A01
C01
none
inline_barcode_2
B06
D08fixed
none
i5_barcode
502
502
501
i7_barcode
704
704
703
Sequencing Information
Rep_UID
450_01
450_02
450_INPUT
seq_read_type
paired-ended
paired-ended
paired-ended
read_length
50
50
50
machine
flowcell
lane
File Information
GRCh38
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
GRCh38/450.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
450
final_peaks
peaks
eCLIP
GRCh38
hg19
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
450.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
450
final_peaks
peaks
eCLIP
hg19
Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=450)
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