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PCBP2
eCLIP
in HepG2
Experiment Information
Sequencing Information
File Information
Data Submission
Experiment Information
Replicate Information
QC Stats
Experiment Information (Status:
Released
)
345
345-control
Exp_UID
345
345
RBPARK_Exp_name
ENCODE_ACCESSION
ENCSR339FUY
ENCSR115GAA
ENCODE_alias
gene-yeo:345
gene-yeo:345-control
RBP
PCBP2
PCBP2
Cell_Line
HepG2
HepG2
Batch
Exp_type
eCLIP
control
ENCODE_Antibody_ID
ENCAB000BFY
ENCAB000BFY
Antibody
RN025P
RN025P
Lot_num
1
1
crosslinking_method
ultraviolet irradiation
ultraviolet irradiation
queried_RNP_size_range
175-300
175-300
Self_consistency_hg38
rescue_GRCh38
Status
Released
Released
Project
ENCODE3
ENCODE3
ID
140
155
Replicate Information
Rep_UID
345_01
345_02
345_INPUT
Exp UID
345
345
345
Replicate_type
rep1
rep2
control
ENCODE_ACCESSION
ENCLB089KST
ENCLB874ISY
ENCLB848HDX
ENCODE_alias
gene-yeo:345_01
gene-yeo:345_02
gene-yeo:345_INPUT
Biosample Name
HepG2_032015
HepG2_032315
HepG2_032015
Biosample_ENCODE_Accession
ENCBS548DJV
ENCBS859FFE
ENCBS548DJV
Biosample_ENCODE_Alias
gene-yeo:HepG2_032015
gene-yeo:HepG2_032315
gene-yeo:HepG2_032015
Cell_Line
HepG2
HepG2
HepG2
Culture_Start_Date
2015-02-27
2015-03-02
2015-02-27
Culture_End_Date
2015-03-20
2015-03-23
2015-03-20
Passage
4
4
4
QC Stats
Experiment QC
345
345-control
Self_consistency_hg38
rescue_GRCh38
Replicate QC
Rep_UID
345_01
345_02
345_INPUT
eCT
Usable_reads
Entropy_hg38
Library-Prep
Sequencing
Library-Prep Information
Rep_UID
345_01
345_02
345_INPUT
library_size_selection_method
agarose gel extraction
agarose gel extraction
agarose gel extraction
strand_specificity
reverse
reverse
reverse
inline_barcode_1
A01
C01
none
inline_barcode_2
B06
D08fixed
none
i5_barcode
502
502
502
i7_barcode
704
704
703
Sequencing Information
Rep_UID
345_01
345_02
345_INPUT
seq_read_type
paired-ended
paired-ended
paired-ended
read_length
50
50
50
machine
flowcell
lane
File Information
GRCh38
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
GRCh38/345.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
345
final_peaks
peaks
eCLIP
GRCh38
hg19
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
345.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
345
final_peaks
peaks
eCLIP
hg19
Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=345)
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