ENCORE eCLIP:302

SND1 eCLIP in HepG2

Experiment Information (Status: Released)

	302	302-control
Exp_UID	302	302
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR061EVO	ENCSR167OYL
ENCODE_alias	gene-yeo:302	gene-yeo:302-control
RBP	SND1	SND1
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB162GME	ENCAB162GME
Antibody	A302-883A	A302-883A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	108	132

Replicate Information


Rep_UID	302_01	302_02	302_INPUT
Exp UID	302	302	302
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB201FCW	ENCLB004YEU	ENCLB092TOO
ENCODE_alias	gene-yeo:302_01	gene-yeo:302_02	gene-yeo:302_INPUT
Biosample Name	HepG2_082214_batchB	HepG2_032315	HepG2_082214_batchB
Biosample_ENCODE_Accession	ENCBS861HMN	ENCBS859FFE	ENCBS861HMN
Biosample_ENCODE_Alias	gene-yeo:HepG2_082214_batchB	gene-yeo:HepG2_032315	gene-yeo:HepG2_082214_batchB
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2014-07-23	2015-03-02	2014-07-23
Culture_End_Date	2014-08-22	2015-03-23	2014-08-22
Passage	4	4	4

QC Stats

Experiment QC

	302	302-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	302_01	302_02	302_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	302_01	302_02	302_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A03	A04	none
inline_barcode_2	G07	F05	none
i5_barcode	506	506	505
i7_barcode	706	706	706

Sequencing Information


Rep_UID	302_01	302_02	302_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/302.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	302	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
302.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	302	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=302)