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SLTM
eCLIP
in HepG2
Experiment Information
Sequencing Information
File Information
Data Submission
Experiment Information
Replicate Information
QC Stats
Experiment Information (Status:
Released
)
227
227-control
Exp_UID
227
227
RBPARK_Exp_name
ENCODE_ACCESSION
ENCSR351PVI
ENCSR670UPZ
ENCODE_alias
gene-yeo:227
gene-yeo:227-control
RBP
SLTM
SLTM
Cell_Line
HepG2
HepG2
Batch
Exp_type
eCLIP
control
ENCODE_Antibody_ID
ENCAB526HXQ
ENCAB526HXQ
Antibody
A302-834A
A302-834A
Lot_num
1
1
crosslinking_method
ultraviolet irradiation
ultraviolet irradiation
queried_RNP_size_range
175-300
175-300
Self_consistency_hg38
rescue_GRCh38
Status
Released
Released
Project
ENCODE3
ENCODE3
ID
107
131
Replicate Information
Rep_UID
227_01
227_02
227_INPUT
Exp UID
227
227
227
Replicate_type
rep1
rep2
control
ENCODE_ACCESSION
ENCLB093OIS
ENCLB318PMA
ENCLB617IRT
ENCODE_alias
gene-yeo:227_01
gene-yeo:227_02
gene-yeo:227_INPUT
Biosample Name
HepG2_031414
HepG2_082214_batchA
HepG2_082214_batchA
Biosample_ENCODE_Accession
ENCBS537ADD
ENCBS547JWV
ENCBS547JWV
Biosample_ENCODE_Alias
gene-yeo:HepG2_031414
gene-yeo:HepG2_082214_batchA
gene-yeo:HepG2_082214_batchA
Cell_Line
HepG2
HepG2
HepG2
Culture_Start_Date
2014-02-11
2014-07-23
2014-07-23
Culture_End_Date
2014-03-14
2014-08-21
2014-08-21
Passage
4
4
4
QC Stats
Experiment QC
227
227-control
Self_consistency_hg38
rescue_GRCh38
Replicate QC
Rep_UID
227_01
227_02
227_INPUT
eCT
Usable_reads
Entropy_hg38
Library-Prep
Sequencing
Library-Prep Information
Rep_UID
227_01
227_02
227_INPUT
library_size_selection_method
agarose gel extraction
agarose gel extraction
agarose gel extraction
strand_specificity
reverse
reverse
reverse
inline_barcode_1
A01
C01
none
inline_barcode_2
B06
D08fixed
none
i5_barcode
506
506
506
i7_barcode
705
705
704
Sequencing Information
Rep_UID
227_01
227_02
227_INPUT
seq_read_type
paired-ended
paired-ended
paired-ended
read_length
50
50
50
machine
flowcell
lane
File Information
GRCh38
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
GRCh38/227.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
227
final_peaks
peaks
eCLIP
GRCh38
hg19
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
227.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
227
final_peaks
peaks
eCLIP
hg19
Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=227)
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