TBC1D3

General Information

Gene Name : TBC1D3
Gene ID : ENSG00000274611.3
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TBC1D3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TBC1D3	ENSG00000274611.3	0.00	0.00	0.00	ENCSR000AEF
HepG2	TBC1D3	ENSG00000274611.3	0.00	0.00	0.00	ENCSR985KAT
K562	TBC1D3	ENSG00000274611.3	0.53	0.52	0.53	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TBC1D3 is not avaliable on ENCORE database.

Proteins bound to RNA

TBC1D3 RNA is bound by 12 proteins.

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eCLIP assay for TBC1D3 is not avaliable on ENCORE database.

12 proteins are bound to TBC1D3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	36357234	36357284	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.09360	28.76148	HepG2	U2AF2
chr17	36358116	36358152	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.19165	23.66170	HepG2	PRPF8
chr17	36358112	36358166	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.81920	19.57559	HepG2	U2AF2
chr17	36358079	36358116	-	intron-Distal,intron-Proximal	6.46319	16.30191	HepG2	PRPF8
chr17	36350038	36350208	-	intron-Distal	4.95697	15.14933	HepG2	HNRNPK
chr17	36351901	36351997	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.06787	12.35960	HepG2	BCLAF1
chr17	36357231	36357282	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.91572	8.27013	K562	U2AF2
chr17	36358079	36358167	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.56923	7.52282	K562	PRPF8
chr17	36358083	36358171	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.04015	7.03098	HepG2	EFTUD2
chr17	36358081	36358163	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.77109	6.93060	K562	EFTUD2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 17 entries

eCLIP assay for TBC1D3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TBC1D3 is not available on ENCORE database.
38 RBPs can affect the levels of TBC1D3.

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The Knockdown/knockout RNA-Seq assay for TBC1D3 is not available on ENCORE database.

38 RBPs can affect the gene expression of TBC1D3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TBC1D3	ENSG00000197681.8	86.51990	16.14010	2.42230	13.11870	11.71110	HepG2	HNRNPF
TBC1D3	ENSG00000197681.8	59.61600	2.10120	4.82630	12.57240	10.55890	HepG2	CCAR1
TBC1D3	ENSG00000197681.8	82.66800	4.49560	4.20060	12.36600	10.48010	K562	BOP1
TBC1D3	ENSG00000197681.8	72.85430	2.23240	5.02820	12.00970	10.28770	HepG2	LARP4
TBC1D3	ENSG00000197681.8	57.12470	4.34580	3.71630	9.47250	7.59510	K562	SF3B1
TBC1D3	ENSG00000197681.8	11.49090	83.78970	-2.86630	6.30680	5.46510	HepG2	ACO1
TBC1D3	ENSG00000197681.8	34.28020	2.66450	3.68530	7.16630	5.27230	K562	CCAR1
TBC1D3	ENSG00000197681.8	34.01950	3.15990	3.42830	6.09150	4.53980	K562	SUPV3L1
TBC1D3	ENSG00000197681.8	33.68190	3.33720	3.33520	5.92590	4.37710	K562	UCHL5
TBC1D3	ENSG00000197681.8	39.06700	4.55630	3.09990	5.19460	4.11300	K562	GPKOW
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 40 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TBC1D3 is not available on ENCORE database.

3 RBPs can affect the splicing of TBC1D3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	TBC1D3	ENSG00000197681.8	chr17	-	36353600	36353787	36353600	36353765	36357157	36357272	0.08800	0.00245	0.01541	longer	K562	AQR
SE	TBC1D3	ENSG00000197681.8	chr17	-	36347009	36347082	36346761	36346847	36351935	36351996	-0.32900	0.00277	0.08392	excluded	HepG2	HNRNPC
SE	TBC1D3	ENSG00000197681.8	chr17	-	36347009	36347082	36346761	36346847	36351935	36351996	0.27700	0.00286	0.05789	included	HepG2	SRSF1

Showing 1 to 3 of 3 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TBC1D3

General Information

Functions

Localization

Domains (AlphaFold: TBC1D3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TBC1D3 is not avaliable on ENCORE database.

12 proteins are bound to TBC1D3 RNA:

eCLIP assay for TBC1D3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TBC1D3 is not available on ENCORE database.

38 RBPs can affect the gene expression of TBC1D3 :

The Knockdown/knockout RNA-Seq assay for TBC1D3 is not available on ENCORE database.

3 RBPs can affect the splicing of TBC1D3 :

The Knockdown/knockout RNA-Seq assay for TBC1D3 is not avaliable on ENCORE database.