TARBP1

General Information

Gene Name : TARBP1
Gene ID : ENSG00000059588.9
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TARBP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TARBP1	ENSG00000059588.9	43.49	34.12	38.80	ENCSR000AEF
HepG2	TARBP1	ENSG00000059588.9	23.33	35.38	29.36	ENCSR985KAT
K562	TARBP1	ENSG00000059588.9	14.79	15.41	15.10	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TARBP1 is not avaliable on ENCORE database.

Proteins bound to RNA

TARBP1 RNA is bound by 35 proteins.

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eCLIP assay for TARBP1 is not avaliable on ENCORE database.

35 proteins are bound to TARBP1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	234611567	234611639	-	intron-Distal	5.52631	35.82963	HepG2	SUGP2
chr1	234610957	234611085	-	intron-Distal	4.34469	34.42859	HepG2	SUGP2
chr1	234596008	234596075	-	CDS,intron-Distal	4.39649	32.40924	HepG2	BCLAF1
chr1	234611669	234611721	-	intron-Distal	6.18899	27.83767	HepG2	HNRNPM
chr1	234609934	234610004	-	intron-Distal	5.12800	25.89595	HepG2	SUGP2
chr1	234553913	234553971	-	CDS,intron-Distal	4.73665	24.88719	HepG2	BCLAF1
chr1	234563393	234563453	-	CDS,intron-Distal	5.44882	24.61729	HepG2	BCLAF1
chr1	234611229	234611320	-	intron-Distal	4.98059	24.60095	HepG2	SUGP2
chr1	234601401	234601450	-	CDS,intron-Distal,intron-Proximal	3.92850	23.92775	HepG2	BCLAF1
chr1	234611491	234611567	-	intron-Distal	4.54958	23.55823	HepG2	SUGP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 142 entries

eCLIP assay for TARBP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TARBP1 is not available on ENCORE database.
103 RBPs can affect the levels of TARBP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TARBP1 is not available on ENCORE database.

103 RBPs can affect the gene expression of TARBP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TARBP1	ENSG00000059588.5	2973.00720	1173.75020	1.34070	57.10450	54.97850	HepG2	TAF15
TARBP1	ENSG00000059588.5	505.11620	1379.84180	-1.44980	30.73430	27.84410	K562	TARDBP
TARBP1	ENSG00000059588.5	933.66520	2106.27720	-1.17370	28.40560	26.76810	HepG2	PUF60
TARBP1	ENSG00000059588.5	248.64490	734.87650	-1.56340	28.02750	26.20800	K562	HNRNPC
TARBP1	ENSG00000059588.5	1503.84310	623.29610	1.27060	28.49650	26.13720	HepG2	FUBP3
TARBP1	ENSG00000059588.5	589.04910	1390.67720	-1.23930	22.30880	20.49330	K562	PTBP1
TARBP1	ENSG00000059588.5	1110.00100	2183.62300	-0.97620	18.13670	15.98610	K562	PUF60
TARBP1	ENSG00000059588.5	1090.31730	1676.61920	-0.62080	16.64140	15.58160	HepG2	ZNF622
TARBP1	ENSG00000059588.5	615.59790	1116.57120	-0.85900	16.89010	15.50810	K562	FXR1
TARBP1	ENSG00000059588.5	343.99920	807.52420	-1.23110	17.12250	15.22570	K562	PRPF8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 116 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TARBP1 is not available on ENCORE database.

25 RBPs can affect the splicing of TARBP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TARBP1	ENSG00000059588.5	chr1	-	234563062	234563134			234561418	234561539	234563321	234563512	-0.32700	0.00000	0.00000	excluded	HepG2	U2AF2
SE	TARBP1	ENSG00000059588.5	chr1	-	234545222	234545319			234541648	234541845	234546190	234546277	0.79800	0.00000	0.00000	included	HepG2	UCHL5
SE	TARBP1	ENSG00000059588.5	chr1	-	234534127	234534299			234529391	234529583	234536926	234537008	-0.16300	0.00000	0.00020	excluded	HepG2	HNRNPL
SE	TARBP1	ENSG00000059588.5	chr1	-	234545222	234545319			234541648	234541845	234546190	234546277	0.64100	0.00000	0.00004	included	K562	HNRNPL
SE	TARBP1	ENSG00000059588.5	chr1	-	234563062	234563134			234561418	234561539	234563321	234563512	-0.54000	0.00000	0.00000	excluded	HepG2	SF3A3
SE	TARBP1	ENSG00000059588.5	chr1	-	234563062	234563134			234561418	234561539	234563321	234563512	-0.42100	0.00000	0.00006	excluded	K562	U2AF2
MXE	TARBP1	ENSG00000059588.5	chr1	-	234534127	234534268	234536598	234536694	234529391	234529583	234536926	234537008	0.17500	0.00000	0.00054	1included	HepG2	HNRNPL
MXE	TARBP1	ENSG00000059588.5	chr1	-	234534127	234534299	234536598	234536694	234529391	234529583	234536926	234537008	-0.15900	0.00000	0.00057	2included	HepG2	PRPF4
SE	TARBP1	ENSG00000059588.5	chr1	-	234563062	234563134			234561418	234561539	234563321	234563512	-0.29800	0.00001	0.00031	excluded	HepG2	SRSF1
SE	TARBP1	ENSG00000059588.5	chr1	-	234563062	234563134			234561418	234561539	234563321	234563512	-0.24600	0.00001	0.00842	excluded	HepG2	SLTM

Showing 1 to 10 of 40 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TARBP1

General Information

Functions

Localization

Domains (AlphaFold: TARBP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TARBP1 is not avaliable on ENCORE database.

35 proteins are bound to TARBP1 RNA:

eCLIP assay for TARBP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TARBP1 is not available on ENCORE database.

103 RBPs can affect the gene expression of TARBP1 :

The Knockdown/knockout RNA-Seq assay for TARBP1 is not available on ENCORE database.

25 RBPs can affect the splicing of TARBP1 :

The Knockdown/knockout RNA-Seq assay for TARBP1 is not avaliable on ENCORE database.