SEMA4C

General Information

Gene Name : SEMA4C
Gene ID : ENSG00000168758.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SEMA4C)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SEMA4C	ENSG00000168758.10	2.37	4.42	3.40	ENCSR000AEF
HepG2	SEMA4C	ENSG00000168758.10	32.32	12.95	22.63	ENCSR985KAT
K562	SEMA4C	ENSG00000168758.10	21.24	14.67	17.95	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SEMA4C is not avaliable on ENCORE database.

Proteins bound to RNA

SEMA4C RNA is bound by 72 proteins.

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eCLIP assay for SEMA4C is not avaliable on ENCORE database.

72 proteins are bound to SEMA4C RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	97525816	97525874	-	3'-UTR,intron-Distal	6.40351	400.00000	K562	PUM2
chr2	97525614	97525679	-	3'-UTR,intron-Distal	6.47734	75.14159	K562	UPF1
chr2	97525679	97525748	-	3'-UTR,intron-Distal	6.90171	73.76265	K562	UPF1
chr2	97535557	97535760	-	5'-UTR,intron-Distal,intron-Proximal	4.50984	64.37172	K562	FASTKD2
chr2	97525681	97525743	-	3'-UTR,intron-Distal	5.87395	62.18166	K562	DDX6
chr2	97531291	97531347	-	intron-Distal,intron-Proximal	6.66572	58.21274	K562	SF3B4
chr2	97535600	97535718	-	5'-UTR,intron-Distal,intron-Proximal	4.12135	55.83470	K562	DROSHA
chr2	97525563	97525719	-	3'-UTR,intron-Distal	3.93381	54.07496	K562	PUM2
chr2	97535421	97535546	-	intron-Distal	4.31207	53.02756	K562	DROSHA
chr2	97531042	97531129	-	CDS,intron-Distal,intron-Proximal	4.99984	48.67648	K562	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 470 entries

eCLIP assay for SEMA4C is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SEMA4C is not available on ENCORE database.
126 RBPs can affect the levels of SEMA4C.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SEMA4C is not available on ENCORE database.

126 RBPs can affect the gene expression of SEMA4C :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SEMA4C	ENSG00000168758.6	631.12270	1851.23190	-1.55250	47.59280	46.10490	HepG2	SSB
SEMA4C	ENSG00000168758.6	8128.28540	3140.51410	1.37190	43.53610	41.30890	K562	PUS1
SEMA4C	ENSG00000168758.6	999.77160	2185.38170	-1.12820	31.44100	29.01250	K562	SYNCRIP
SEMA4C	ENSG00000168758.6	6075.88080	3043.76550	0.99710	26.26440	24.62710	K562	AGGF1
SEMA4C	ENSG00000168758.6	2196.92930	1308.67800	0.74730	26.25010	24.40240	HepG2	DAZAP1
SEMA4C	ENSG00000168758.6	768.62190	1728.85870	-1.16950	25.37850	24.26100	HepG2	SRSF1
SEMA4C	ENSG00000168758.6	4108.24050	2433.65850	0.75530	23.96390	21.80240	K562	SF3A3
SEMA4C	ENSG00000168758.6	782.56920	1494.42270	-0.93330	23.04410	21.58720	HepG2	PUS1
SEMA4C	ENSG00000168758.6	924.49690	1941.35290	-1.07030	23.51420	20.94980	K562	SAFB
SEMA4C	ENSG00000168758.6	6804.44180	3167.25000	1.10310	20.64160	18.51770	K562	AKAP8L
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 148 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SEMA4C is not available on ENCORE database.

12 RBPs can affect the splicing of SEMA4C :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SEMA4C	ENSG00000168758.6	chr2	-	97532019	97532168	97531448	97531666	97535612	97535708	-0.19700	0.00000	0.00001	excluded	K562	PUS1
SE	SEMA4C	ENSG00000168758.6	chr2	-	97529064	97529139	97527473	97527631	97529418	97529531	0.35300	0.00000	0.00000	included	K562	HNRNPC
RI	SEMA4C	ENSG00000168758.6	chr2	-	97531448	97531666	97531448	97531501	97531603	97531666	0.25100	0.00000	0.00000	included	K562	PUS1
RI	SEMA4C	ENSG00000168758.6	chr2	-	97531448	97531666	97531448	97531501	97531603	97531666	0.12200	0.00000	0.00000	included	K562	AGGF1
RI	SEMA4C	ENSG00000168758.6	chr2	-	97531448	97531666	97531448	97531501	97531603	97531666	0.13800	0.00000	0.00000	included	K562	AKAP8L
RI	SEMA4C	ENSG00000168758.6	chr2	-	97531448	97531666	97531448	97531501	97531603	97531666	0.10200	0.00000	0.00000	included	K562	RBM15
RI	SEMA4C	ENSG00000168758.6	chr2	-	97531448	97531666	97531448	97531501	97531603	97531666	0.11300	0.00000	0.00000	included	K562	UTP18
RI	SEMA4C	ENSG00000168758.6	chr2	-	97527315	97527552	97527315	97527386	97527473	97527552	0.12300	0.00000	0.00010	included	K562	EFTUD2
SE	SEMA4C	ENSG00000168758.6	chr2	-	97532019	97532168	97531448	97531666	97535612	97535708	-0.13500	0.00015	0.00612	excluded	K562	RBM15
SE	SEMA4C	ENSG00000168758.6	chr2	-	97532019	97532168	97531603	97531666	97533514	97533663	-0.16200	0.00119	0.02384	excluded	HepG2	U2AF1

Showing 1 to 10 of 18 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SEMA4C

General Information

Functions

Localization

Domains (AlphaFold: SEMA4C)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SEMA4C is not avaliable on ENCORE database.

72 proteins are bound to SEMA4C RNA:

eCLIP assay for SEMA4C is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SEMA4C is not available on ENCORE database.

126 RBPs can affect the gene expression of SEMA4C :

The Knockdown/knockout RNA-Seq assay for SEMA4C is not available on ENCORE database.

12 RBPs can affect the splicing of SEMA4C :

The Knockdown/knockout RNA-Seq assay for SEMA4C is not avaliable on ENCORE database.