SCMH1

General Information

Gene Name : SCMH1
Gene ID : ENSG00000010803.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SCMH1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SCMH1	ENSG00000010803.16	20.88	20.19	20.54	ENCSR000AEF
HepG2	SCMH1	ENSG00000010803.16	43.35	34.14	38.75	ENCSR985KAT
K562	SCMH1	ENSG00000010803.16	25.47	24.91	25.19	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SCMH1 is not avaliable on ENCORE database.

Proteins bound to RNA

SCMH1 RNA is bound by 35 proteins.

CanvasJS.com

eCLIP assay for SCMH1 is not avaliable on ENCORE database.

35 proteins are bound to SCMH1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	41687784	41687828	-	intron-Distal	5.56825	40.53604	HepG2	PTBP1
chr1	41687828	41687850	-	intron-Distal	5.39223	38.80801	HepG2	PTBP1
chr1	41687783	41687895	-	intron-Distal	5.67683	30.78849	K562	PTBP1
chr1	41635244	41635333	-	intron-Distal	5.06283	15.54659	HepG2	QKI
chr1	41687850	41687885	-	intron-Distal	4.44955	15.30908	HepG2	PTBP1
chr1	41707269	41707394	-	intron-Distal	4.09987	12.69141	HepG2	NKRF
chr1	41503202	41503280	-	CDS,intron-Distal,intron-Proximal	5.06918	12.20587	HepG2	SF3B4
chr1	41630288	41630392	-	intron-Distal	5.20418	11.55133	K562	SAFB2
chr1	41638865	41638933	-	intron-Distal	4.13519	11.23387	K562	EXOSC5
chr1	41542327	41542446	-	intron-Distal	4.12881	10.94082	HepG2	QKI
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 141 entries

eCLIP assay for SCMH1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SCMH1 is not available on ENCORE database.
109 RBPs can affect the levels of SCMH1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SCMH1 is not available on ENCORE database.

109 RBPs can affect the gene expression of SCMH1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SCMH1	ENSG00000010803.12	911.81580	1964.46950	-1.10730	33.36350	32.12680	HepG2	SRFBP1
SCMH1	ENSG00000010803.12	1010.13080	1959.28030	-0.95580	33.15020	31.28980	HepG2	UPF1
SCMH1	ENSG00000010803.12	844.44780	1739.26070	-1.04240	25.19530	23.94790	HepG2	RBM22
SCMH1	ENSG00000010803.12	648.34070	1368.15870	-1.07740	17.80560	16.19140	HepG2	HNRNPK
SCMH1	ENSG00000010803.12	726.95860	1582.15030	-1.12190	17.58920	16.15690	HepG2	DDX3X
SCMH1	ENSG00000010803.12	720.56220	1651.58300	-1.19670	17.22970	16.01790	HepG2	AKAP1
SCMH1	ENSG00000010803.12	681.54610	1499.92120	-1.13800	17.15850	15.66740	HepG2	NCBP2
SCMH1	ENSG00000010803.12	1461.78740	2154.83260	-0.55980	16.09100	15.04470	HepG2	ZNF622
SCMH1	ENSG00000010803.12	713.62600	1185.00440	-0.73170	15.97930	14.77320	HepG2	ACO1
SCMH1	ENSG00000010803.12	774.22280	1267.07980	-0.71070	15.40760	14.29290	HepG2	SRSF9
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 126 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SCMH1 is not available on ENCORE database.

26 RBPs can affect the splicing of SCMH1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SCMH1	ENSG00000010803.12	chr1	-	41499654	41499720			41494255	41494398	41503033	41503213	-0.65100	0.00000	0.00000	excluded	K562	SRSF1
SE	SCMH1	ENSG00000010803.12	chr1	-	41499654	41499720			41494255	41494398	41503033	41503213	-0.38600	0.00000	0.00000	excluded	HepG2	SRSF1
SE	SCMH1	ENSG00000010803.12	chr1	-	41617285	41617356			41608549	41608784	41626546	41626570	-0.29100	0.00000	0.00012	excluded	HepG2	SF3A3
SE	SCMH1	ENSG00000010803.12	chr1	-	41506982	41507237			41503033	41503213	41512089	41512270	-0.26200	0.00000	0.00032	excluded	K562	HNRNPUL1
SE	SCMH1	ENSG00000010803.12	chr1	-	41506982	41507237			41503033	41503213	41512089	41512270	-0.28500	0.00000	0.00132	excluded	K562	NPM1
MXE	SCMH1	ENSG00000010803.12	chr1	-	41617285	41617356	41625396	41625605	41608549	41608784	41626546	41626570	-0.31500	0.00002	0.00124	2included	HepG2	HNRNPK
SE	SCMH1	ENSG00000010803.12	chr1	-	41618270	41618413			41617285	41617356	41625396	41625605	0.35300	0.00006	0.00717	included	HepG2	RBM22
SE	SCMH1	ENSG00000010803.12	chr1	-	41628450	41628651			41627035	41627104	41651792	41651922	-0.24000	0.00006	0.01685	excluded	K562	EIF3G
SE	SCMH1	ENSG00000010803.12	chr1	-	41628450	41628651			41627035	41627104	41651792	41651922	0.18600	0.00007	0.04223	included	K562	SMNDC1
SE	SCMH1	ENSG00000010803.12	chr1	-	41617285	41617356			41608549	41608784	41626546	41626570	-0.29500	0.00007	0.00543	excluded	HepG2	SF3B4

Showing 1 to 10 of 40 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SCMH1

General Information

Functions

Localization

Domains (AlphaFold: SCMH1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SCMH1 is not avaliable on ENCORE database.

35 proteins are bound to SCMH1 RNA:

eCLIP assay for SCMH1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SCMH1 is not available on ENCORE database.

109 RBPs can affect the gene expression of SCMH1 :

The Knockdown/knockout RNA-Seq assay for SCMH1 is not available on ENCORE database.

26 RBPs can affect the splicing of SCMH1 :

The Knockdown/knockout RNA-Seq assay for SCMH1 is not avaliable on ENCORE database.