LGMN

General Information

Gene Name : LGMN
Gene ID : ENSG00000100600.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LGMN)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LGMN	ENSG00000100600.14	2.76	2.91	2.83	ENCSR000AEF
HepG2	LGMN	ENSG00000100600.14	73.88	50.35	62.11	ENCSR985KAT
K562	LGMN	ENSG00000100600.14	0.26	0.18	0.22	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LGMN is not avaliable on ENCORE database.

Proteins bound to RNA

LGMN RNA is bound by 18 proteins.

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eCLIP assay for LGMN is not avaliable on ENCORE database.

18 proteins are bound to LGMN RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr14	93214838	93214961	-	5'-UTR,intron-Distal,intron-Proximal	4.75486	42.68137	HepG2	DDX3X
chr14	93172845	93172908	-	3'-UTR,CDS,intron-Distal	5.05153	30.33237	HepG2	SND1
chr14	93185622	93185670	-	intron-Distal	4.45123	21.19850	HepG2	G3BP1
chr14	93176088	93176169	-	3'-UTR,CDS,intron-Distal	4.64366	16.81720	HepG2	SND1
chr14	93172908	93172962	-	3'-UTR,CDS,intron-Distal	4.28808	16.52613	HepG2	SND1
chr14	93172826	93172845	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.91886	14.71009	HepG2	SND1
chr14	93182480	93182543	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.94006	14.05085	HepG2	SND1
chr14	93170331	93170422	-	3'-UTR,intron-Distal	3.74942	13.25408	HepG2	LARP4
chr14	93185651	93185670	-	intron-Distal	5.60355	10.93867	K562	NIPBL
chr14	93176017	93176068	-	3'-UTR,CDS,intron-Distal	3.77665	10.81522	HepG2	SND1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 37 entries

eCLIP assay for LGMN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LGMN is not available on ENCORE database.
90 RBPs can affect the levels of LGMN.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LGMN is not available on ENCORE database.

90 RBPs can affect the gene expression of LGMN :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LGMN	ENSG00000100600.10	2477.70180	1428.23990	0.79470	22.17640	20.71510	HepG2	CELF1
LGMN	ENSG00000100600.10	1766.40870	1061.40840	0.73470	19.29270	17.93000	HepG2	UTP3
LGMN	ENSG00000100600.10	3491.86210	1568.00350	1.15500	19.15230	17.88310	HepG2	AKAP1
LGMN	ENSG00000100600.10	869.11060	1453.05260	-0.74150	17.62240	16.56360	HepG2	SSB
LGMN	ENSG00000100600.10	3069.20130	1502.01470	1.03090	17.81060	16.36820	HepG2	DDX3X
LGMN	ENSG00000100600.10	1741.86260	1107.26390	0.65350	16.46260	15.24310	HepG2	ACO1
LGMN	ENSG00000100600.10	2491.35750	1542.03480	0.69200	13.62910	12.20800	HepG2	PUM2
LGMN	ENSG00000100600.10	553.04680	1098.41010	-0.98990	14.14180	12.16360	HepG2	ADAR
LGMN	ENSG00000100600.10	698.32060	1295.25190	-0.89130	13.04750	11.64730	HepG2	U2AF1
LGMN	ENSG00000100600.10	1737.09820	1209.10810	0.52260	12.51510	11.56260	HepG2	ZNF622
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 102 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LGMN is not available on ENCORE database.

4 RBPs can affect the splicing of LGMN :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	LGMN	ENSG00000100600.10	chr14	-	93170984	93171052			93170153	93170706	93176016	93176217	-0.18800	0.00001	0.00248	excluded	HepG2	SRSF7
SE	LGMN	ENSG00000100600.10	chr14	-	93170984	93171052			93170153	93170706	93176016	93176217	0.11500	0.00086	0.01814	included	HepG2	U2AF1
MXE	LGMN	ENSG00000100600.10	chr14	-	93170984	93171052	93172827	93172998	93170153	93170706	93176016	93176217	0.06500	0.00157	0.02113	1included	HepG2	SFPQ
SE	LGMN	ENSG00000100600.10	chr14	-	93170984	93171052			93170153	93170706	93176016	93176217	-0.14900	0.00210	0.05458	excluded	HepG2	SF3A3

Showing 1 to 4 of 4 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LGMN

General Information

Functions

Localization

Domains (AlphaFold: LGMN)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LGMN is not avaliable on ENCORE database.

18 proteins are bound to LGMN RNA:

eCLIP assay for LGMN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LGMN is not available on ENCORE database.

90 RBPs can affect the gene expression of LGMN :

The Knockdown/knockout RNA-Seq assay for LGMN is not available on ENCORE database.

4 RBPs can affect the splicing of LGMN :

The Knockdown/knockout RNA-Seq assay for LGMN is not avaliable on ENCORE database.