GSN

General Information

Gene Name : GSN
Gene ID : ENSG00000148180.19
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GSN)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GSN	ENSG00000148180.19	2.48	4.40	3.44	ENCSR000AEF
HepG2	GSN	ENSG00000148180.19	352.26	170.33	261.30	ENCSR985KAT
K562	GSN	ENSG00000148180.19	5.38	3.50	4.44	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GSN is not avaliable on ENCORE database.

Proteins bound to RNA

GSN RNA is bound by 24 proteins.

CanvasJS.com

eCLIP assay for GSN is not avaliable on ENCORE database.

24 proteins are bound to GSN RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	124094823	124094932	+	3'-UTR,CDS	5.89116	400.00000	HepG2	RPS3
chr9	124062224	124062253	+	CDS,intron-Distal,intron-Proximal	4.73675	400.00000	HepG2	DDX3X
chr9	124062168	124062224	+	CDS,intron-Distal	4.40970	400.00000	HepG2	DDX3X
chr9	124064240	124064446	+	3'-UTR,CDS,intron-Proximal	4.19971	61.82114	HepG2	RPS3
chr9	124091168	124091233	+	CDS,intron-Proximal	5.67191	56.71992	HepG2	SND1
chr9	124081003	124081144	+	CDS,intron-Proximal	4.69655	55.18520	HepG2	RPS3
chr9	124062163	124062249	+	CDS,intron-Distal,intron-Proximal	4.75268	53.67543	HepG2	RPS3
chr9	124062108	124062168	+	5'-UTR,CDS,intron-Distal	3.89172	52.77443	HepG2	DDX3X
chr9	124081040	124081100	+	CDS	5.25952	48.82994	HepG2	SND1
chr9	124094712	124094782	+	CDS	5.43972	47.65628	HepG2	SND1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 162 entries

eCLIP assay for GSN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GSN is not available on ENCORE database.
146 RBPs can affect the levels of GSN.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GSN is not available on ENCORE database.

146 RBPs can affect the gene expression of GSN :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GSN	ENSG00000148180.12	32717.78960	10654.58770	1.61850	185.48790	183.15590	HepG2	SSB
GSN	ENSG00000148180.12	5903.04030	18908.64760	-1.67950	167.64020	165.02950	HepG2	PTBP1
GSN	ENSG00000148180.12	5870.11110	16717.19150	-1.50990	154.36920	151.62270	HepG2	SRSF9
GSN	ENSG00000148180.12	4067.07190	10274.75010	-1.33700	119.80160	117.04520	HepG2	PUS1
GSN	ENSG00000148180.12	23435.88420	9736.52950	1.26710	118.03550	114.95110	HepG2	UPF1
GSN	ENSG00000148180.12	24202.56920	9650.90020	1.32630	112.80700	110.28720	HepG2	DKC1
GSN	ENSG00000148180.12	24767.41400	10708.32990	1.20960	110.15870	108.08270	HepG2	ZNF622
GSN	ENSG00000148180.12	7744.46780	18582.99090	-1.26270	101.64560	98.92430	HepG2	PCBP1
GSN	ENSG00000148180.12	32275.25630	5662.98250	2.51070	100.22130	97.38020	HepG2	SUPV3L1
GSN	ENSG00000148180.12	16960.85520	8600.99530	0.97950	88.62670	85.99580	HepG2	SLBP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 184 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GSN is not available on ENCORE database.

13 RBPs can affect the splicing of GSN :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	GSN	ENSG00000148180.12	chr9	+	124062333	124062404			124043747	124043840	124064240	124064445	-0.15700	0.00000	0.00002	excluded	HepG2	RBM22
SE	GSN	ENSG00000148180.12	chr9	+	124062333	124062404			124043747	124043840	124064240	124064445	-0.23000	0.00000	0.00085	excluded	HepG2	DDX55
SE	GSN	ENSG00000148180.12	chr9	+	124062333	124062404			124043747	124043840	124064240	124064445	0.25500	0.00002	0.00506	included	HepG2	SSB
MXE	GSN	ENSG00000148180.12	chr9	+	124074616	124074766	124076211	124076301	124072961	124073123	124079363	124079496	-0.16700	0.00002	0.00026	2included	HepG2	U2AF2
SE	GSN	ENSG00000148180.12	chr9	+	124062333	124062404			124043747	124043840	124064240	124064445	-0.49900	0.00006	0.00125	excluded	HepG2	U2AF2
SE	GSN	ENSG00000148180.12	chr9	+	124062333	124062404			124043747	124043840	124064240	124064445	0.29600	0.00011	0.01454	included	HepG2	QKI
SE	GSN	ENSG00000148180.12	chr9	+	124062333	124062404			124043747	124043840	124064240	124064445	-0.20800	0.00012	0.00950	excluded	HepG2	PTBP1
SE	GSN	ENSG00000148180.12	chr9	+	124062342	124062404			124043747	124043840	124064240	124064445	-0.20600	0.00020	0.07161	excluded	HepG2	BCCIP
SE	GSN	ENSG00000148180.12	chr9	+	124062333	124062404			124043747	124043840	124064240	124064445	0.52300	0.00027	0.02349	included	HepG2	FTO
SE	GSN	ENSG00000148180.12	chr9	+	124062333	124062404			124043747	124043840	124064240	124064445	-0.41100	0.00029	0.03977	excluded	HepG2	RBFOX2

Showing 1 to 10 of 14 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GSN

General Information

Functions

Localization

Domains (AlphaFold: GSN)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GSN is not avaliable on ENCORE database.

24 proteins are bound to GSN RNA:

eCLIP assay for GSN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GSN is not available on ENCORE database.

146 RBPs can affect the gene expression of GSN :

The Knockdown/knockout RNA-Seq assay for GSN is not available on ENCORE database.

13 RBPs can affect the splicing of GSN :

The Knockdown/knockout RNA-Seq assay for GSN is not avaliable on ENCORE database.