YKT6

General Information

Gene Name : YKT6
Gene ID : ENSG00000106636.7
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: YKT6)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	YKT6	ENSG00000106636.7	41.45	47.44	44.45	ENCSR000AEF
HepG2	YKT6	ENSG00000106636.7	40.08	43.81	41.95	ENCSR985KAT
K562	YKT6	ENSG00000106636.7	52.76	54.20	53.48	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for YKT6 is not avaliable on ENCORE database.

Proteins bound to RNA

YKT6 RNA is bound by 21 proteins.

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eCLIP assay for YKT6 is not avaliable on ENCORE database.

21 proteins are bound to YKT6 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	44252307	44252422	+	3'-UTR	6.59260	400.00000	K562	UPF1
chr7	44252423	44252477	+	3'-UTR	6.18712	56.41795	K562	UPF1
chr7	44252552	44252626	+	3'-UTR	7.21406	55.60142	K562	UPF1
chr7	44252312	44252360	+	3'-UTR	6.88529	54.36819	K562	FAM120A
chr7	44252659	44252716	+	3'-UTR	7.87504	51.45899	K562	UPF1
chr7	44253787	44253853	+	3'-UTR	5.57146	46.65156	K562	UPF1
chr7	44252268	44252307	+	3'-UTR	6.63303	44.93493	K562	UPF1
chr7	44252626	44252659	+	3'-UTR	7.66775	41.95525	K562	UPF1
chr7	44252477	44252552	+	3'-UTR	5.73755	41.39768	K562	UPF1
chr7	44253145	44253191	+	3'-UTR	6.46357	40.61271	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 76 entries

eCLIP assay for YKT6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for YKT6 is not available on ENCORE database.
87 RBPs can affect the levels of YKT6.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for YKT6 is not available on ENCORE database.

87 RBPs can affect the gene expression of YKT6 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
YKT6	ENSG00000106636.3	6854.39520	2951.01130	1.21570	35.29880	33.40980	K562	AQR
YKT6	ENSG00000106636.3	2278.07970	1318.59250	0.78870	30.62710	29.30880	HepG2	ZNF622
YKT6	ENSG00000106636.3	1204.07040	2177.39980	-0.85470	25.82650	24.30870	HepG2	ETF1
YKT6	ENSG00000106636.3	503.98990	1197.72180	-1.24880	21.67670	19.98430	HepG2	CPSF6
YKT6	ENSG00000106636.3	3390.70890	2202.67170	0.62220	19.15970	17.45950	K562	UPF1
YKT6	ENSG00000106636.3	1866.74490	1157.51870	0.68940	17.30180	15.99460	HepG2	UTP3
YKT6	ENSG00000106636.3	4082.33460	2240.55300	0.86540	16.93220	15.63110	K562	PUS1
YKT6	ENSG00000106636.3	3004.01250	1351.90080	1.15180	15.75270	14.06860	HepG2	SF3A3
YKT6	ENSG00000106636.3	2570.72600	1379.15780	0.89830	15.62930	13.82810	K562	PRPF8
YKT6	ENSG00000106636.3	1180.12190	643.92430	0.87390	13.65860	12.42520	HepG2	RPS19
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 103 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for YKT6 is not available on ENCORE database.

5 RBPs can affect the splicing of YKT6 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	YKT6	ENSG00000106636.3	chr7	+	44250440	44250530			44247734	44247797	44250621	44250723	0.06600	0.00000	0.00000	included	HepG2	RBM22
A5SS	YKT6	ENSG00000106636.3	chr7	+	44247658	44247860			44247658	44247797	44250621	44250868	0.06900	0.00000	0.00000	longer	K562	AQR
A5SS	YKT6	ENSG00000106636.3	chr7	+	44250621	44250868			44250621	44250723	44251845	44253893	0.07600	0.00000	0.00000	longer	K562	AQR
SE	YKT6	ENSG00000106636.3	chr7	+	44250621	44250723			44247731	44247797	44251845	44253893	-0.06700	0.00064	0.02640	excluded	K562	PRPF8
SE	YKT6	ENSG00000106636.3	chr7	+	44250621	44250652			44247731	44247797	44251845	44253893	-0.11900	0.00103	0.03854	excluded	K562	TARDBP
MXE	YKT6	ENSG00000106636.3	chr7	+	44245983	44246084	44246986	44247091	44244166	44244249	44247731	44247797	-0.09600	0.00136	0.04043	2included	K562	UCHL5

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

YKT6

General Information

Functions

Localization

Domains (AlphaFold: YKT6)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for YKT6 is not avaliable on ENCORE database.

21 proteins are bound to YKT6 RNA:

eCLIP assay for YKT6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for YKT6 is not available on ENCORE database.

87 RBPs can affect the gene expression of YKT6 :

The Knockdown/knockout RNA-Seq assay for YKT6 is not available on ENCORE database.

5 RBPs can affect the splicing of YKT6 :

The Knockdown/knockout RNA-Seq assay for YKT6 is not avaliable on ENCORE database.