SMPD4

General Information

Gene Name : SMPD4
Gene ID : ENSG00000136699.19
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SMPD4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SMPD4	ENSG00000136699.19	14.79	30.92	22.86	ENCSR000AEF
HepG2	SMPD4	ENSG00000136699.19	118.22	68.61	93.41	ENCSR985KAT
K562	SMPD4	ENSG00000136699.19	73.77	53.37	63.57	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SMPD4 is not avaliable on ENCORE database.

Proteins bound to RNA

SMPD4 RNA is bound by 31 proteins.

CanvasJS.com

eCLIP assay for SMPD4 is not avaliable on ENCORE database.

31 proteins are bound to SMPD4 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	130921390	130921407	-	intron-Distal	6.63444	400.00000	HepG2	RBFOX2
chr2	130921371	130921390	-	intron-Distal	6.12674	400.00000	HepG2	RBFOX2
chr2	130921309	130921368	-	intron-Distal	6.58533	400.00000	HepG2	RBFOX2
chr2	130921407	130921468	-	intron-Distal	7.06622	400.00000	HepG2	RBFOX2
chr2	130919823	130919878	-	intron-Distal	9.78081	267.86747	HepG2	RBFOX2
chr2	130919811	130919823	-	intron-Distal	9.46328	211.49104	HepG2	RBFOX2
chr2	130919791	130919811	-	intron-Distal	9.05159	154.84960	HepG2	RBFOX2
chr2	130921493	130921530	-	intron-Distal	6.45590	96.85532	HepG2	RBFOX2
chr2	130921595	130921641	-	intron-Distal	7.19869	86.79242	HepG2	RBFOX2
chr2	130919789	130919879	-	intron-Distal	6.19457	84.59901	K562	DROSHA
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 155 entries

eCLIP assay for SMPD4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SMPD4 is not available on ENCORE database.
103 RBPs can affect the levels of SMPD4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SMPD4 is not available on ENCORE database.

103 RBPs can affect the gene expression of SMPD4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SMPD4	ENSG00000136699.15	2151.08870	4952.81440	-1.20320	55.67110	53.92960	HepG2	RBM22
SMPD4	ENSG00000136699.15	2902.05820	5161.03300	-0.83060	34.03860	32.10680	HepG2	AUH
SMPD4	ENSG00000136699.15	2047.68170	3725.66060	-0.86350	33.27240	31.19060	HepG2	PRPF4
SMPD4	ENSG00000136699.15	1818.09810	2969.40750	-0.70770	23.45450	22.13940	HepG2	SRSF9
SMPD4	ENSG00000136699.15	1874.77100	3280.79530	-0.80730	23.11800	21.71750	HepG2	TAF15
SMPD4	ENSG00000136699.15	3776.39340	5593.93600	-0.56690	21.53150	20.47880	HepG2	SRFBP1
SMPD4	ENSG00000136699.15	4669.09320	3091.70160	0.59460	19.15270	17.77970	K562	AGGF1
SMPD4	ENSG00000136699.15	4948.41360	3108.59930	0.67060	17.86040	16.32870	K562	RBM15
SMPD4	ENSG00000136699.15	2110.37640	3583.48870	-0.76390	17.48240	15.85020	HepG2	CALR
SMPD4	ENSG00000136699.15	3487.24350	4783.19140	-0.45590	16.24790	15.19760	HepG2	ZNF622
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 115 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SMPD4 is not available on ENCORE database.

55 RBPs can affect the splicing of SMPD4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	SMPD4	ENSG00000136699.15	chr2	-	130918758	130918845	130914933	130914969	130921946	130922018	0.33300	0.00000	included	HepG2	G3BP1
SE	SMPD4	ENSG00000136699.15	chr2	-	130918758	130918845	130914823	130914969	130921946	130922018	0.38800	0.00000	included	HepG2	U2AF1
SE	SMPD4	ENSG00000136699.15	chr2	-	130918758	130918845	130914933	130914969	130921946	130922018	0.24000	0.00007	included	HepG2	HNRNPK
SE	SMPD4	ENSG00000136699.15	chr2	-	130918758	130918845	130914823	130914969	130921946	130922018	0.24700	0.00000	included	HepG2	U2AF2
SE	SMPD4	ENSG00000136699.15	chr2	-	130918758	130918845	130914933	130914969	130921946	130922018	0.18600	0.00446	included	HepG2	SUGP2
SE	SMPD4	ENSG00000136699.15	chr2	-	130912354	130912473	130911849	130912055	130912668	130912832	0.08100	0.00000	included	K562	AQR
SE	SMPD4	ENSG00000136699.15	chr2	-	130914823	130914969	130914157	130914248	130921946	130922018	-0.11700	0.00008	excluded	K562	AQR
SE	SMPD4	ENSG00000136699.15	chr2	-	130918758	130918845	130914823	130914969	130921946	130922018	-0.20500	0.00000	excluded	K562	PUS1
SE	SMPD4	ENSG00000136699.15	chr2	-	130918758	130918845	130914933	130914969	130921946	130922018	-0.17700	0.00137	excluded	K562	MTPAP
SE	SMPD4	ENSG00000136699.15	chr2	-	130918758	130918845	130914933	130914969	130921946	130922018	0.22300	0.00191	included	HepG2	EFTUD2

Showing 1 to 10 of 99 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SMPD4

General Information

Functions

Localization

Domains (AlphaFold: SMPD4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SMPD4 is not avaliable on ENCORE database.

31 proteins are bound to SMPD4 RNA:

eCLIP assay for SMPD4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SMPD4 is not available on ENCORE database.

103 RBPs can affect the gene expression of SMPD4 :

The Knockdown/knockout RNA-Seq assay for SMPD4 is not available on ENCORE database.

55 RBPs can affect the splicing of SMPD4 :

The Knockdown/knockout RNA-Seq assay for SMPD4 is not avaliable on ENCORE database.