RPS19BP1

General Information

Gene Name : RPS19BP1
Gene ID : ENSG00000187051.8
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RPS19BP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RPS19BP1	ENSG00000187051.8	5.53	13.84	9.69	ENCSR000AEF
HepG2	RPS19BP1	ENSG00000187051.8	45.84	16.25	31.05	ENCSR985KAT
K562	RPS19BP1	ENSG00000187051.8	46.73	19.50	33.11	ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	RPS19BP1-BG293LV05-WT293		RPS19BP1	293T	Released			shRNA	KD% = ,
knockdown followed by RNA-seq	RPS19BP1-BG293LV06-WT293		RPS19BP1	293T	Released			shRNA	KD% = ,

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Sample_reps	Control_reps	KD%	Status	Project
RPS19BP1	293T	shRNA	RPS19BP1-BG293LV05-81,RPS19BP1-BG293LV05-82	NT-BG293LV05-1,NT-BG293LV05-2	,	Released	ENCORE2
RPS19BP1	293T	shRNA	BG293LV05-83,BG293LV05-84	BG293LV05-1,BG293LV05-2		NotSatisfied	ENCORE2
RPS19BP1	293T	shRNA	RPS19BP1-BG293LV06-87B,RPS19BP1-BG293LV06-88B	NT-BG293LV06-1B,NT-BG293LV06-2B	,	Released	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RPS19BP1 is not avaliable on ENCORE database.

Proteins bound to RNA

RPS19BP1 RNA is bound by 8 proteins.

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eCLIP assay for RPS19BP1 is not avaliable on ENCORE database.

8 proteins are bound to RPS19BP1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	39928690	39928752	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.75716	21.64325	HepG2	DDX3X
chr22	39928407	39928499	-	CDS,intron-Distal	3.83529	16.10484	K562	DDX3X
chr22	39928482	39928530	-	CDS,intron-Distal,intron-Proximal	5.56448	14.58841	HepG2	DDX3X
chr22	39928499	39928529	-	CDS,intron-Distal,intron-Proximal	5.21360	12.62211	K562	DDX3X
chr22	39928691	39928748	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.00615	10.10446	K562	DDX3X
chr22	39925261	39925326	-	3'-UTR,intron-Distal	4.70409	8.19301	K562	PABPC4
chr22	39925157	39925246	-	3'-UTR,intron-Distal,intron-Proximal	3.46496	6.32318	HepG2	SUB1
chr22	39925131	39925167	-	3'-UTR,intron-Distal,intron-Proximal	5.88697	5.71015	K562	PABPC4
chr22	39925197	39925230	-	3'-UTR,intron-Distal,intron-Proximal	3.50947	5.42819	K562	PABPC4
chr22	39925339	39925454	-	3'-UTR,intron-Distal,intron-Proximal	4.33628	4.19989	HepG2	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 16 entries

eCLIP assay for RPS19BP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RPS19BP1 is not available on ENCORE database.
97 RBPs can affect the levels of RPS19BP1.

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The Knockdown/knockout RNA-Seq assay for RPS19BP1 is not available on ENCORE database.

97 RBPs can affect the gene expression of RPS19BP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RPS19BP1	ENSG00000187051.4	756.86090	285.39330	1.40700	27.46940	25.47360	K562	PTBP1
RPS19BP1	ENSG00000187051.4	1394.74510	651.10580	1.09890	25.68810	23.89190	K562	DDX47
RPS19BP1	ENSG00000187051.4	628.53710	279.79270	1.16750	16.51640	14.79590	K562	SRSF1
RPS19BP1	ENSG00000187051.4	124.84650	329.82210	-1.40150	15.22070	14.06260	HepG2	TAF15
RPS19BP1	ENSG00000187051.4	846.45300	482.54690	0.81070	13.69600	12.53610	K562	AGGF1
RPS19BP1	ENSG00000187051.4	431.64900	198.41020	1.12130	13.61900	11.81760	K562	EIF3G
RPS19BP1	ENSG00000187051.4	589.31090	293.73830	1.00440	12.92100	11.00430	K562	MAGOH
RPS19BP1	ENSG00000187051.4	631.58320	283.14230	1.15730	12.15140	10.48340	K562	TARDBP
RPS19BP1	ENSG00000187051.4	532.32520	309.49090	0.78230	10.69310	9.68790	HepG2	PUM1
RPS19BP1	ENSG00000187051.4	826.82790	392.01440	1.07660	10.17380	8.59130	K562	RPS19
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 107 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RPS19BP1 is not available on ENCORE database.

2 RBPs can affect the splicing of RPS19BP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
A3SS	RPS19BP1	ENSG00000187051.4	chr22	-	39925824	39926040			39925824	39925922	39928399	39928528	0.09500	0.00000	0.00000	longer	K562	AQR
SE	RPS19BP1	ENSG00000187051.4	chr22	-	39926468	39926559			39925824	39925922	39928399	39928528	0.05700	0.00004	0.00570	included	HepG2	IGF2BP3

Showing 1 to 2 of 2 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RPS19BP1

General Information

Functions

Localization

Domains (AlphaFold: RPS19BP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RPS19BP1 is not avaliable on ENCORE database.

8 proteins are bound to RPS19BP1 RNA:

eCLIP assay for RPS19BP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RPS19BP1 is not available on ENCORE database.

97 RBPs can affect the gene expression of RPS19BP1 :

The Knockdown/knockout RNA-Seq assay for RPS19BP1 is not available on ENCORE database.

2 RBPs can affect the splicing of RPS19BP1 :

The Knockdown/knockout RNA-Seq assay for RPS19BP1 is not avaliable on ENCORE database.