PSMC4

General Information

Gene Name : PSMC4
Gene ID : ENSG00000013275.7
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PSMC4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PSMC4	ENSG00000013275.7	55.27	78.36	66.81	ENCSR000AEF
HepG2	PSMC4	ENSG00000013275.7	123.99	93.98	108.98	ENCSR985KAT
K562	PSMC4	ENSG00000013275.7	123.29	129.02	126.16	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PSMC4 is not avaliable on ENCORE database.

Proteins bound to RNA

PSMC4 RNA is bound by 21 proteins.

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eCLIP assay for PSMC4 is not avaliable on ENCORE database.

21 proteins are bound to PSMC4 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	40477096	40477146	+	5'-UTR,CDS,intron-Proximal	3.63488	15.13050	K562	DDX3X
chr19	40487197	40487270	+	3'-UTR,CDS	3.74876	13.83446	HepG2	PCBP2
chr19	40487202	40487282	+	3'-UTR,CDS	3.73645	12.50846	K562	PABPC4
chr19	40487298	40487335	+	3'-UTR	5.51196	10.44987	K562	PABPC4
chr19	40478049	40478134	+	CDS,intron-Proximal	3.85818	9.30456	K562	RPS3
chr19	40485725	40485820	+	CDS	4.41838	9.25286	K562	PUM2
chr19	40477147	40477225	+	intron-Proximal	4.67673	9.04436	K562	AQR
chr19	40478087	40478146	+	CDS	3.95175	8.82687	K562	UCHL5
chr19	40480613	40480675	+	CDS,intron-Proximal	3.32850	7.39396	HepG2	BUD13
chr19	40487270	40487295	+	3'-UTR	5.30567	6.97910	HepG2	PCBP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 49 entries

eCLIP assay for PSMC4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PSMC4 is not available on ENCORE database.
91 RBPs can affect the levels of PSMC4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PSMC4 is not available on ENCORE database.

91 RBPs can affect the gene expression of PSMC4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PSMC4	ENSG00000013275.3	3288.78620	1652.18190	0.99310	56.55940	54.91170	HepG2	ZNF622
PSMC4	ENSG00000013275.3	2563.60550	1512.52390	0.76110	24.08370	22.98910	HepG2	SRSF1
PSMC4	ENSG00000013275.3	1458.98840	756.97160	0.94660	17.50100	16.15190	HepG2	RPS19
PSMC4	ENSG00000013275.3	3519.78470	1670.26030	1.07530	16.74030	15.54330	HepG2	AKAP1
PSMC4	ENSG00000013275.3	2628.04420	1665.06290	0.65830	15.97820	14.63290	K562	FXR1
PSMC4	ENSG00000013275.3	2173.60330	1450.35930	0.58360	12.85740	11.70690	HepG2	UTP3
PSMC4	ENSG00000013275.3	691.56890	1687.90370	-1.28730	12.74130	11.08020	HepG2	SNRNP70
PSMC4	ENSG00000013275.3	1766.96180	1021.65510	0.79030	12.20910	10.33250	K562	SF3B4
PSMC4	ENSG00000013275.3	1892.89850	1283.51800	0.56040	11.38860	10.22170	HepG2	SMN1
PSMC4	ENSG00000013275.3	2413.38940	1388.95720	0.79700	11.24550	9.98190	HepG2	IGF2BP2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 109 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PSMC4 is not available on ENCORE database.

3 RBPs can affect the splicing of PSMC4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	PSMC4	ENSG00000013275.3	chr19	+	40486192	40486624	40486192	40486361	40486568	40486624	0.06400	0.00000	0.00001	included	HepG2	SF3A3
RI	PSMC4	ENSG00000013275.3	chr19	+	40486192	40486624	40486192	40486361	40486568	40486624	0.05500	0.00000	0.00000	included	K562	AQR
RI	PSMC4	ENSG00000013275.3	chr19	+	40485976	40486361	40485976	40486053	40486192	40486361	0.05300	0.00000	0.00000	included	K562	AQR
RI	PSMC4	ENSG00000013275.3	chr19	+	40485976	40486361	40485976	40486053	40486192	40486361	0.06400	0.00004	0.00224	included	HepG2	UCHL5
A3SS	PSMC4	ENSG00000013275.3	chr19	+	40478233	40478462	40478368	40478462	40478034	40478151	0.24400	0.00008	0.00068	longer	K562	AQR

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PSMC4

General Information

Functions

Localization

Domains (AlphaFold: PSMC4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PSMC4 is not avaliable on ENCORE database.

21 proteins are bound to PSMC4 RNA:

eCLIP assay for PSMC4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PSMC4 is not available on ENCORE database.

91 RBPs can affect the gene expression of PSMC4 :

The Knockdown/knockout RNA-Seq assay for PSMC4 is not available on ENCORE database.

3 RBPs can affect the splicing of PSMC4 :

The Knockdown/knockout RNA-Seq assay for PSMC4 is not avaliable on ENCORE database.